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8 protocols using ab150135

1

Antibody Characterization for Cell Biology

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The following antibodies were used for Western blotting:

RIF1; Bethyl Laboratories; A300‐568A; rabbit polyclonal

GFP; Abcam; ab290; rabbit polyclonal

GFP; ChromoTek; rat monoclonal [3H9]

MCM4; Abcam, ab4459; rabbit polyclonal

p‐S40‐MCM2; Abcam; ab133243; rabbit monoclonal [EPR4170(2)]

p‐S53‐MCM2; Bethyl Laboratories; A300‐756A; rabbit polyclonal

PP1α; Santa Cruz Biotechnology; sc‐271762; mouse monoclonal [G‐4]

PP1β; Santa Cruz Biotechnology; sc‐373782; mouse monoclonal [C‐5]

PP1γ; Santa Cruz Biotechnology; sc‐6108; goat polyclonal

Tubulin; Santa Cruz Biotechnology; sc‐53030; rat monoclonal [YOL1/34]

Following antibodies were used for flow cytometric analysis of chromatin‐associated proteins at indicated dilutions:

Cdt1 antibody; Abcam ab202067, at 1/100 dilution

FLAG tag antibody [M2]; Sigma F‐1804, at 1/300 dilution

MCM3 antibody; Santa Cruz sc‐9850, at 1/300 dilution

ORC2 antibody; Abcam ab31930, at 1/200 dilution

Alexa Fluor 488‐conjugated anti‐mouse IgG (ab150109), at 1/2,000 dilution

Alexa Fluor 568‐conjugated anti‐mouse IgG (ab175700), at 1/2,000 dilution

Alexa Fluor 647‐conjugated anti‐goat IgG (ab150135), at 1/2,000 dilution

Alexa Fluor 647‐conjugated anti‐rabbit IgG (ab150063), at 1/2,000 dilution

For immunoprecipitation of endogenous RIF1 protein, Abcam ab70254 was used. For microscopic observation of Cdc6 protein, Abcam ab188423 was used.
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2

Immunofluorescence Analysis of Kidney Tissue

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All sections were incubated with anti-DcR2 antibody followed by Alexa-555 conjugated goat anti-rabbit antibody (ab150078; Abcam), FLIP (ab8421; Abcam), Bcl2 (ab182858; Abcam), and caspase 3 (ab184787; Abcam) followed by Alexa-647 conjugated monkey anti-goat antibody (ab150135; Abcam); α-SMA, collagen IV, GRP78, fibronectin (ab6328; Abcam), p16 (ab54210; Abcam), p21 (2947 S, Celling Signaling), cyclin D1 (ab16663; Abcam), IL-6 (bs-4587MM, Bioss, China), and TGF-β1 (ab179615; Abcam) incubated with Alexa-488 conjugated goat anti-mouse antibody (ab150117; Abcam) at 37 °C for 1 h and co-stained with DAPI (C1006; Biyuntian Biotechnology, China). In addition, renal sections from STZ-DN mice were incubated with the TUNEL fluorescein kit (Biyuntian Biotechnology) according to the manufacturer’s protocol. Images were obtained via confocal microscopy (Leica, Germany) and analyzed using Image J software (version 1.37; NIH, Bethesda, USA).
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3

Immunofluorescence Protocol for Vascular and Adipose Tissue

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Primary antibodies and concentrations used for immunofluorescence in this study are as follows: rat anti-mouse CD31 (Biolegend cat#102501, 1:100), goat anti-mouse perilipin (Abcam ab61682,1:50), rabbit anti-laminin (Sigma L9393, 1:200). Secondary antibodies used in this study are: donkey anti-rabbit IgG Alexa Fluor® 488 (Abcam, ab150073, 1:200), donkey anti-rat IgG Alexa Fluor® 647 (Abcam, ab150155, 1:200), donkey anti-goat IgG Alexa Fluor® 647 (Abcam, ab150135).
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4

Immunofluorescence Staining of Vascular and Adipose Tissues

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Primary antibodies and concentrations used for immunofluorescence in this study are as follows: rat anti-mouse CD31 (BioLegend [San Diego, CA, USA] catalog no. 102501, 1:100), goat anti-mouse perilipin (Abcam [Cambridge, MA, USA] ab61682,1:50), rabbit anti-laminin (Sigma [St. Louis, MO, USA] L9393, 1:200). Secondary antibodies used in this study are donkey anti-rabbit IgG Alexa Fluor 488 (Abcam, ab150073, 1:200), donkey anti-rat IgG Alexa Fluor 647 (Abcam, ab150155, 1:200), donkey anti-goat IgG Alexa Fluor 647 (Abcam, ab150135).
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5

Immunofluorescence Characterization of Neural Cells

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Cells were fixed in methyl alcohol and permeabilized with 0.3% Triton X-100 in phosphate-buffered saline (PBS). After blocking in 10% bovine serum albumin (BSA), cells were incubated overnight at 4 °C with the following primary antibodies: anti-GFAP (MAB360; EMD Millipore, Burlington, MA, USA), anti-aldh1L1 (NBP2-50045; Novus Biologicals, Littleton, CO, USA), anti-nestin (ab92391; Abcam), anti-Oct4 (ab18976; Abcam), anti-neuronal nuclear protein (NeuN) (MAB377; EMD Millipore), anti-MAP2 (M9942; Sigma-Aldrich, St. Louis, MO, USA and ab32454; Abcam), anti-ionized calcium-binding adaptor molecule 1 (Iba1) (PA5-27436; Invitrogen, Carlsbad, CA, USA and NB100-1028; Novus Biologicals), anti-bromodeoxyuridine (BrdU) (B5002; Abcam), anti-Ki67 (ab15580; Abcam), anti-BDNF (ab108319; Abcam), and anti-nerve growth factor (NGF) (ab52918; Abcam). After treatment with primary antibodies, the cells were washed with PBS and then incubated with secondary antibodies conjugated with Alexa488, Alexa555 (A11001, A22428; Invitrogen), and Alexa647 (ab150135; Abcam) for 1.5 h at room temperature. After washing with PBS, immunostained cells were mounted with VECTASHIELD® Antifade mounting medium with DAPI (H-1200; Vector Laboratories, Burlingame, CA, USA) and observed with a confocal microscope (FV31-S; Olympus, Tokyo, Japan).
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6

Immunofluorescent Labeling of COX26 in Cochlea

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The cochlea harvested from the in vitro experiment was sliced according to the method mentioned in HE staining. 0.1% Triton X-100 (×100; Sigma–Aldrich) was dropped on the fixed sections. Following 15 min of permeabilization, 5% normal goat serum (SL038; Solarbio, China) was used to seal the tissue sections. After 1 h, the anti-COX26 antibody (ab59020; Abcam, UK) diluted 200 times and covered with the cochlea sections overnight (4°C). After the surface liquid was sucked, the cochlea sections were further reacted with the labeled Donkey Anti-Goat antibody (fluorescently labeled Alexa Fluor® 647; dilution ratio: 1/500; ab150135; Abcam) for 1 h, followed by being stained with DAPI staining and mounted with fluorescent mounting fluid. The stained sections were observed under a microscope at a magnification of ×400, and the expression of COX26 in the Corti’s organ was detected.
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7

Immunofluorescent Analysis of Apoptosis Markers

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Tissue sections and cells were incubated with anti-DcR2 antibody followed by Alexa-555 conjugated goat anti-rabbit antibody (ab150078; Abcam), DR5 (sc-7192, Santa Cruz) followed by Alexa-647 conjugated monkey anti-goat antibody (ab150135; Abcam), anti-PRDX1 (ab16745; Abcam), cyclin D1 (ab16663; Abcam), CDK6 (ab151247; Abcam), p16 (ab54210; Abcam), and anti-TRAIL antibody (550912; BD Pharmingen, San Diego, CA) overnight at 4 C. Then they were incubated with Alexa-488 conjugated goat antimouse antibody (ab150117; Abcam) at 37 C for 1 hour and costained with 4 0 ,6-diamidino-2-phenylindole (C1006; Biyuntian Biotechnology, Shanghai, China). Images were detected by confocal microscopy (Leica, Wetzlar, Germany) and analyzed with Image J software (version 1.37; National Institutes of Health, Bethesda, MD).
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8

Immunofluorescence Imaging of Osteoblast Markers

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Osteoblasts were seeded onto a 35 mm Glass Bottom Dish and allowed to equilibrate for 12 h. Osteoblasts were then cultured for 24 h with fresh 10% FBS α-MEM containing either 10 ng/ml FGF7 or PBS solution. After the treatments, the cells were washed three times for 2 min and fixed with 4% paraformaldehyde for 10 min, followed by three rinsed with PBS. Then they were permeabilized with 0.25% Triton X-100 for 5 min, washed with PBS. Afterward, the cells were blocked with 5% bovine serum albumin for 60 min, washed with PBS, followed by the addition of E11 antibody (1:200) (R&D Systems, AF3244) and connexin43 antibody (1:200) (Abcam, ab11370) and then incubated overnight at 4 °C. Following incubation, the cells were washed three times for 15 min with PBS. Either Donkey anti-goat IgG (Abcam, ab150135) or Donkey anti-rabbit IgG (Abcam, ab150075) was added and incubated for 2h at room temperature. Then, FITC-conjugated phalloidin (Invitrogen, CA, USA) in PBS was added for double staining and incubated overnight at 4 °C. Followed incubation, the cells were washed three times for 5 min and then stained by DAPI (Sigma, Aldrich, Louis, MO, USA) for nucleus staining. The cell images were captured using a modified confocal laser scanning microscope. (A1R MP+, Nikon, Tokyo, Japan and Olympus, FV3000, Japan) and analyzed with Image-Pro Plus Software 6.0.
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