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7 protocols using lamin b

1

Western Blot Analysis of Inflammatory Markers

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Western blot was performed as previously described [21 (link)]. Mice were sacrificed after being anesthetized, and the hippocampi were collected and homogenized with ice cold RIPA lysis buffer. After centrifuging at 12,000 g for 15 min at 4°C, the supernatants were collected, and the protein concentration was measured using a BCA protein assay kit (Bioworld, USA). Equal proteins were separated by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis gel, transferred onto a PVDF membrane, and incubated in 5% non-fat milk for 2 h at room temperature (RT). Then, the membrane was incubated at 4°C overnight with COX-2 (1 : 2,000, Bioworld, USA), iNOS (1 : 1,000, BD Biosciences, USA), p-IκB (1 : 500, Cell Signaling Technology, USA), IκB (1 : 500, Cell Signaling Technology, USA), p65 (1 : 500, Cell Signaling Technology, USA), GAPDH (1 : 5,000, Bioworld, USA), and lamin B (1 : 2,000, Bioworld, USA). The membrane was washed with TBST for 30 min, and incubated in the proper secondary antibody for 1 h. Then, membranes were washed for 45 min with TBST, and processed with chemiluminescence reagents using an ECL kit (Thermo Fisher, USA). ImageJ (NIH, USA) was used to examine the intensities of the bands.
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2

Subcellular RNA and Protein Fractionation

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For HEK293T and LLCMK2 cells, RNAs and proteins from the cytoplasm and nuclei were fractioned using a PARIS kit (Life Technology, AM1921). The frozen brain tissues from macaque and human were fractioned using hypotonic buffer (HEPES 20 mM; KCl 10 mM; EDTA 1 mM; glycerol 10%; NP-40 0.2%). An RNase inhibitor (Invitrogen, RNaseOUT) was added throughout the RNA fractionation procedure, and PMSF (Sigma) and proteinase inhibitors (Roche) were added during the protein fractionation procedure. The quality of the subcellular fractionation was evaluated by western blotting assays, with lamin-B (BioWorld, MB2029) and β-tubulin (KBQBIO, RLM3139) used as the marker for the nuclear and the cytoplasmic fraction, respectively.
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3

Protein Expression and Localization

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Tissues and cells were homogenized in Tissue Protein Extraction Reagent or Mammalian Protein Extraction Reagent (Thermo). Nuclear and cytoplasmic components were isolated using NE-PER nuclear and cytoplasmic extraction kit (Thermo). Homogenates (20 μg of total protein) were separated by SDS-PAGE and transferred to nitrocellulose membranes.
Antibodies were used against the following proteins: Sirt6, Sirt1, Ac-H3K9, FoxO1, p-FoxO1 (Cell Signaling, Beverly, MA, USA), Ac-lysine, Sirt2, Sirt3 (Abcam, Cambridge, UK), ubiquitin (Santa Cruz Biochemicals, Dallas, TX, USA), Sirt4, lamin B, GAPDH (Bioworld Technology, St Louis Park, MN, USA), Sirt5, Sirt7, Ac-FoxO1 (LifeSpan Biosciences, Seattle, WA, USA), and HSP90 (Enzo Life Sciences, Plymouth Meeting, PA, USA).
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4

Protein Extraction and Western Blot Analysis

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Total proteins were extracted by RIPA-lysis buffer (Beijing Solarbio Science & Technology, China), and nuclear proteins were extracted by a nuclear protein extraction kit (Applygen Technologies, China). The proteins were separated and transferred to a polyvinylidene fluoride membrane. The membrane was blocked using non-fat milk for 1 h at room temperature (RT). After incubation with primary antibody in TBS-T overnight at 4 °C, the membrane was washed extensively with TBS-T and then incubated with secondary antibody for 1 h at RT. The primary antibodies used in this study were β-actin, Runx2, NFATc1 (Santa Cruz Biotechnology, USA), and Lamin B (Bioworld Technology, USA).
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5

Gamma-Glutamylcysteine Modulates Inflammatory Response

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Gamma-glutamylcysteine (γ-GC, CAS No. 636-58-8) was obtained from Biospecialties International (Mayfield, Australia), as a sodium salt. Lipopolysaccharides (LPS, from Escherichia coli 0111: B4), N-acetyl-L-cysteine (NAC), 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), L-Glutathione reduced (GSH), cycloheximide (CHX) were purchased from Sigma Aldrich (St. Louis, USA). The monoclonal antibody to COX-2, iNOS, Nrf2, p-IκBα (Ser 32), NF-κB p65, NF-κB p-p65 (Ser 536), GCL catalytic subunit (GCLC), GCL modifier subunit (GCLM) were purchased from Santa Cruz Biotechnology (Dallas, USA). The monoclonal antibody to p-IKKα/β (Ser 176/180), IKKβ, HO-1, IκBα were purchased from Cell Signaling Technology (Beverly, USA). The polyclonal antibody to GSS was purchased from Proteintech Group (Rosemont, USA). The polyclonal antibody to GAPDH, LaminB, anti-rabbit-HRP IgG and anti-mouse-HRP IgG were purchased from Bioworld Technology (Minneapolis, USA).
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6

Antibody Analysis of Cellular Proteins

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Antibodies against the following proteins were used: HSP90 (Enzo Life Sciences, Plymouth Meeting, PA, USA), FoxO1, Sirt6, Ac-Lys (Cell Signaling Technology), Ac-FoxO1, ubiquitin (Santa Cruz Biotechnology), CCR3, FoxO3a, FoxO4 (Abcam), lamin B (Bioworld Technology, St Louis Park, MN, USA) and β-actin (Sigma-Aldrich, St. Louis, MO, USA).
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7

Protein Expression Analysis in Cells

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Antibodies against the following proteins were used: Sirt6, p-Akt, Akt, Bax, cleaved caspase-3, Ac-K, Ac-H3K56, ATF4 (Cell Signaling, Beverly, MA, USA), GRP78, p-PERK, p-eIF2α, XBP1s, ubiquitin, ATF6, Sirt1 (Santa Cruz Biochemicals, Dallas, TX, USA), p-IRE1α (Abcam, Cambridge, UK), CHOP, lamin B, GAPDH (Bioworld Technology, St. Louis Park, MN, USA), Ac-H3K9, and β-actin (Sigma-Aldrich).
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