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4 protocols using sc 17852 r

1

Inhibitors of Inflammatory Signaling Pathways

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The recombinant murine IFN-γ and IL-17 were purchased from PeproTech (Rock Hill, NJ, USA). The STAT1 inhibitor fludarabine (Flu), JAK inhibitor AG-490, NF-κB inhibitor SN50, phosphorylated (p-)p38 inhibitor SB203580, p-ERK1/2 inhibitor PD98059 and also antibody against p-p38 MAPK(Thr180/Tyr182) (sc-17852-R) were all supplied by Santa Cruz Biotechnology, Inc. (Shanghai, China). The antibodies against NOS(pan) (#2977), p-STAT1(Y701) (#7649), p-STAT1(S727) (#8826), p-ERK1/2(Thr202/Tyr204) (#4370) and p65 (#8242) were all purchased from Cell Signaling Technology (Danvers, MA, USA). Antibody against STAT1 (#21044-1) was supplied by Signalway Antibody (Baltimore, MD, USA). Antibodies against β-actin (20536-1-AP) and histone H3 (17168-1-AP) were obtained from Proteintech Group (Wuhan, China). The antibody against IκBα (6A920) was purchased from Novus Biologicals (Littleton, CO, USA). Horseradish peroxidase-conjugated goat anti-rabbit (A21020) and goat anti-mouse (A21010) secondary antibodies were both obtained from Abbkine (Redlands, CA, USA).
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2

Setdb1 Knockdown Immunoblotting Protocol

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The cells were transfected with Setdb1 siRNA for 48 h. Approximately 30 μg protein was separated by 8–12% SDS-PAGE and transferred to PVDF membranes (Millipore). The membranes were probed using the following primary antibodies: NOX4 (1:500; NB110-58849; Novus), beta-Actin (1:2000; CW0096; CWBIO), SETDB1 (1:1000; 11231-1-AP; Proteintech), E2F1 (1:500; sc-193; Santa Cruz Biotechnology), FOXO4 (1:500; sc-5221; Santa Cruz Biotechnology), Lamin B (1:500; sc-6217; Santa Cruz Biotechnology), JNK (1:500; sc-7345; Santa Cruz Biotechnology), p-JNK (1:400; WL01813; WanleiBio), γH2AX (1:000; 2577; Cell signaling technology), p38 (1:500; sc-7972; Santa Cruz Biotechnology), and p-P38 (1:500; sc-17852-R; Santa Cruz Biotechnology). All were used as the manufacturer’s recommendation. The secondary antibodies were horse radish peroxidase-linked anti-mouse, anti-rabbit, or anti-goat IgG for 2 h at room temperature. The membranes were visualized on a Bio-Rad Chemidoc XRS using a Western Bright ECL Kit (Bio-Rad, Berkeley, CA, United States).
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3

Western Blot Analysis of Signaling Pathways

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Western blot analysis was conducted as described previously35 (link). Briefly, equal amounts of denatured protein from each lysate were separated by 10% SDS polyacrylamide gels. The proteins were electrophoretically transferred to nitrocellulose membranes using a Bio-Rad Trans-Blot Turbo (Hercules, CA, USA). The amounts of phosphorylated p38, ERK1/ERK2, JNK and levels of IκB-α were detected using rabbit polyclonal anti-p-p38 (Thr 180/Tyr 182)-R (sc-17852-R), mouse monoclonal anti-p-ERK1/2 (pT202/pY204.22A) (sc-136521), mouse monoclonal anti-p-JNK (G-7) (sc-6254) and rabbit polyclonal anti-IκBα (C-21)(sc-371) antibody (Santa Cruz Biotech, Dallas, TX, USA), respectively. These antibodies were used at 1:1000 dilution. Immune complexes were visualised by enhanced chemiluminescence. Ponceau S (0.1% in 5% acetic acid) staining was performed to verify total protein loading. Some blots were stripped and re-probed with rabbit polyclonal anti-p38 (C-20) (sc-535, Santa Cruz, used at 1:1000) antibody to confirm equal loading.
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4

Quantification of Liver Protein Phosphorylation

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Liver protein lysates were obtained in the presence of the ice-cold lysis TNG buffer (Tris-HCl 50 mM, pH7.5, NaCl 200 mM, Tween-20 1%, NP-40 0,2%) supplemented with Complete Mini cocktail, PhosSTOP (Roche, Mannheim, Germany), ß-glicerolphosphate 50 mM (SIGMA), 2 mM phenylmethylsulfonyl Fluoride (PMSF, ROCHE, Mannheim, Germany) and 200 mM Na 3 VO 4 (SIGMA). Protein extracts (50-100 mg) were prepared in laemmli's buffer and analysed by 12% polyacrilamide gel electrophoresis and western blot (Gonzalez-Navarro et al. 2013 (link), Martinez-Hervas et al. 2014) (link). The primary antibodies used were: rabbit polyclonal anti-Phospho-p38 (1/200, sc-17852-R, Santa Cruz Biotechnologies), rabbit polyclonal anti-p38 (1/200, sc-535, Santa Cruz Biotechnologies), rabbit polyclonal anti-Phospho-SAPK/JNK (1/200, Thr183/Tyr185, 9251 Cell Signaling), rabbit polyclonal SAPK/JNK (1/200, 56G8, 9258 Cell Signaling) and mouse monoclonal antia-tubulin (1/500, sc-8035, Santa Cruz Biotechnologies). The HRP-conjugated secondary antibodies (1/500, Santa Cruz Biotechnologies) used were: anti-mouse IgG-HRP (sc-2005) and goat anti-rabbit IgG-HRP (sc-2004) . The immunocomplexes were detected with an ECL Plus detection kit (ThermoFisher Scientific, Barcelona, Spain).
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