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2 protocols using cyclophilin d

1

Mitochondrial Protein Immunoblotting

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Samples were lysed in RIPA buffer (Thermo Fisher Scientific) and centrifuged at 14,000 rpm at 4 °C for 20 min. Supernatants were diluted in 2X Laemmli sample buffer (Bio-Rad). Proteins were separated on 10 or 4–20% gradient Mini-PROTEAN TGX gels (Bio-Rad) and transferred to nitrocellulose blotting membranes (Bio-Rad). Membranes were probed with primary antibodies against FLAG tag (M2, Sigma), MCU (Sigma), MICU1 (Abcam, Cambridge, MA), cytochrome C (Cell Signaling, Danvers, MA), Cyclophilin D (Millipore, Billerica, MA), Tim23 (BD Biosciences, San Jose, CA), VDAC1 (Abcam), COX1 (Abcam), GAPDH (Thermo Fisher Scientific), citrate synthase (Abcam), and an oxidative phosphorylation (OXPHOS) cocktail (Abcam) overnight at 4 °C. Blots were then probed with horseradish peroxidase-conjugated anti-mouse (Jackson ImmunoResearch, West Grove, PA) or anti-rabbit (Thermo Fisher Scientific) secondary antibodies and detected using enhanced chemiluminescence (Bio-Rad).
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2

Protein Expression Analysis in Cardiomyocytes

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Cardiomyocyte LVFW samples were lysed using RIPA lysis buffer (Beyotime Institute of Biotechnology, Jiangsu, China) supplemented with protease inhibitor cocktail and centrifuged at 10,000 × g for 15 min. Protein content of samples was determined by the Bradford assay (Bio-Rad Laboratories, Carlsbad, CA, USA). Aliquots of each sample were separated in a 12% Tris/glycine sodium dodecyl sulfate/polyacrylamide gel and then transferred onto a nitrocellulose membrane that was blocked with skimmed milk for 1 h. The membranes were respectively probed overnight at 4°C with antibodies against the following proteins: Bcl-2 (1:1,000 dilution), Bax (1:1,000 dilution), cytochrome c (1:500 dilution), caspase-9 (1:1,000 dilution), caspase-3 (1:500 dilution), PARP (1:1,000 dilution), and ANT (1:200 dilution) (Cell Signaling Technology); β-actin (1:2,000 dilution), TOM20 (1:500 dilution), and VDAC (1:500 dilution) (Santa Cruz); and cyclophilin D (1:100 dilution; Millipore). After washing with Tris-buffered saline-Tween (TBS-T) buffer three times, the membranes were incubated with appropriate horseradish peroxidase-conjugated secondary antibodies (Beyotime Institute of Biotechnology) for 1 h, and the bound proteins were detected with an enhanced chemiluminescence kit (Thermo Fisher Scientific). The blots were scanned and quantified using ImageJ program (NIH, Bethesda, MD, USA).
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