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2 protocols using nusieve gtg agarose

1

Synthesis and Characterization of PEGylated Polyplexes

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PEG (5 kDa, α-methoxy-ω-NHS ester activated) was purchased from NanoCS (New York, NY). Branched PEI (bPEI), deoxycholate (DOC), N-hydroxy succinimide, 4-dimethylaminopyridine, 1-ethyl-3-(3-dimethyl aminopropyl) carbodiimide hydrochloride (EDC HCl), palmitoyl chloride, resazurin sodium salt, sulforhodamine B based in vitro toxicology assay kit (TOX6), and poly(L-lysine) (PLL, 30-70 kDa) were purchased from Sigma Aldrich (St. Louis, MO). RNAiMAX, 4-12% NuPAGE Bis-Tris precast gels, HEPES buffer (pH 8.0, 1 M), MES buffer (0.1 M, pH 5.0), RIPA buffer, pyridine, NuSieve GTG agarose, dialysis membrane with molecular cut-off (MWCO) of 6-8 and 100 kDa, and other organic solvents were purchased from Fisher Scientific (Waltham, MA). siRNA (5′-GUUGGCACCAGCAGCGCACUU-3′) was purchased from GE Dharmacon (Lafayette, CO). Opti-MEM was purchased from Life Technologies (Carlsbad, CA). Mitochondrial ToxGlo™ assay kit and Bradford assay kit were purchased from Promega (Madison, WI). McCoy's 5A, 0.05% trypsin/EDTA, and phosphate buffered saline (PBS) were from GE Healthcare (Logan, UT). Fetal bovine serum (FBS) was purchased from Atlanta Biologicals (Flowery Branch, GA).
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2

Murine Norovirus Titration Assay

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Murine norovirus (MNV-1) virus stocks were prepared as described (Wobus et al., 2004) . The generation numbers used heretofore refer to number of passages since the start of the present experiment; the 0 th generation refers to the 6 th passage of MNV-1.CW3 (referred to as MNV-1 throughout) (Thackray et al., 2007) .
MNV-1 samples were titrated by 10-fold dilution plaque assays in duplicate as previously described (Gonzalez-Hernandez et al., 2012; Wobus et al., 2004) in Lab 1. Lab 2 employed a protocol with the following modifications. Two hundred microliters of MNV-1 samples, in tenfold dilutions using complete D-MEM with 2% FBS, were inoculated onto wells for titering. Plates were incubated for an hour at 37 o C (Lab 2) and plates were overlaid with 2 ml of D-MEM with 0.7% NuSieve GTG agarose (Lonza Inc., Allendale, NJ). Plates were incubated for 24 hours before a second overlay of 2 ml of D-MEM with 0.7% NuSieve GTG agarose and 0.07% neutral red (Fisher Scientific, Pittsburgh, PA) was added. Plaques were counted following an additional 48 hours of incubation.
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