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Maldi biotyper identification software 3

Manufactured by Bruker
Sourced in Germany

The MALDI Biotyper Identification-Software 3.1 is a software application developed by Bruker. The core function of this software is to provide automated identification of microbial isolates based on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) data.

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2 protocols using maldi biotyper identification software 3

1

Bacterial Growth Evaluation Protocol

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The samples were applied to culture media using standard techniques. Culture media included Bordetella Agar (DifcoTM Bordet Gengou Agar Ref#248200, Becton Dickinson, Le Pont de Claix, France (BD) with 15% sheep blood), BBLTM Columbia Agar with 5% sheep blood (Ref# 211124, BD) and BBLTM Columbia colistin nalidixic acid (CNA) agar with 5% sheep blood (Ref 212104, BD) in order to provide appropriate media for a variety of aerobic bacterial species.
The inoculated agar plates were incubated at 36–38 °C and examined for bacterial growth after 24, 48, and 72 h. Bacterial growth was semiquantitatively assessed. Degree of contamination was defined as negligible (<10 colony forming units (CFU)), moderate (10–50 CFU), or severe (>50 CFU). If bacterial growth was identified, bacterial species were further classified using matrix-assisted laser desorption time of flight mass spectrometry (MALDI-TOF, Microflex LT and MALDI Biotyper Identification-Software 3.1, Bruker Daltonik GmbH, Bremen, Germany; Library: Bruker Taxonomy Tree (8599 Spectra)).
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2

Quantitative Urine Culture in Canines

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Of the 185 urine cultures included in the study, 2 urine samples were obtained by referring veterinarians by cystocentesis and aerobic quantitative urine culture was performed by an accredited laboratory. The remaining 183 urine cultures were performed at the Institute for Infectious Diseases and Zoonoses, Ludwig‐Maximilian‐University, Munich. Urine specimens were submitted directly to the laboratory or stored in the refrigerator at 4°C and culture was initiated within 24 hours after collection. Quantitative aerobic urine culture was performed as described elsewhere26 with the modification that growth was monitored for 3 days. Bacterial growth was quantified in colony‐forming units (CFU)/mL and cutoff values for PUC were defined for each urine collection method based on previously published recommendations27, 28, 29:

Cystocentesis: ≥103 CFU/mL

Catheterization: ≥104 CFU/mL

Midstream‐catch: ≥105 CFU/mL

A matrix‐assisted‐laser‐desorption/ionization time of flight mass spectrometer (Microflex LT and MALDI Biotyper Identification‐Software 3.1, Bruker Daltonik GmbH, Bremen, Germany) was used to identify each colony type.
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