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2 protocols using mouse anti caspase 3

1

Western Blot Protein Analysis Protocol

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Protein measurements were carried out using the Pierce BCA Protein Assay Kit (Thermo Scientific) in accordance with the manufacturer’s instructions. Samples were mixed with Laemmli’s loading buffer, boiled for 5 min, and subjected to SDS-PAGE (12%) followed by blotting onto nitrocellulose membranes for 30 min at 25 V using the Mini Trans-Blot Cell (Bio-Rad). Membranes were blocked for 1 hr with 5% non-fat milk in TBS at room temperature and subsequently probed overnight at 4°C with the primary antibody (1:1000). The following primary antibodies were used: rabbit anti-vinculin, rabbit anti-hexokinase-II, rabbit anti-Na+/K+-ATPase, rabbit anti-cleaved caspase-3 (all from Cell Signaling), mouse anti-caspase-2, mouse anti-caspase-3, mouse anti-PARP1, mouse anti-cytochrome c (all from BD Transduction Lab), mouse anti-lamin B, rabbit anti-Endonuclease G, mouse anti-AIF (all from Santa Cruz Biotech), mouse anti-caspase-8 (Enzo Life Science), rabbit anti-GAPDH (Trevigen), and rabbit anti-ERp29 (kindly provided by Dr. S. Mkrtchian, Karolinska Institutet). After four times washes in TBST (0.05% Tween-20 in TBS), membranes were incubated with appropriate horseradish peroxidase-conjugated secondary antibodies purchased from Cell Signaling (1:4000) for 1 hr at room temperature. Blots were developed using ECL (Amersham Biosciences) and documented using Chemi-Doc (Bio-Rad).
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2

Embryonic Tissue Histological Analysis

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10% formalin-fixed paraffin embedded (FFPE) whole embryos were used for histological analysis. FFPE specimens were sectioned at 10 µm thickness for FISH or 5 µm for immunofluorescence. For immunofluorescence, sections were deparaffinized and then subjected to 10 minutes antigen retrieval in citrate buffer. After washing in PBS, sections were blocked with 5% normal donkey serum, 1% bovine serum albumin and 0.2% Triton X-100 in PBS at room temperature (RT) for 1 hour. Sections were incubated overnight at 4 °C with the following antibodies: rabbit anti-Sox2 (1:400, Cell signaling 2286S), goat anti-Pcadherin (1:500, R&D Systems, AF761), mouse anti-caspase3 (1:100, BD Sciences, 610153). After washing in 0.1% Triton-X 100, sections were incubated with the following secondary antibodies: Alexa Fluor 488-donkey anti-goat (1:200, Life technologies, A11055), Alexa Fluor 488-donkey anti-goat (1:200, Life technologies, A11057), Alexa Fluor 568-donkey anti-rabbit (1:200, Life technologies, A10042) for 1 hour at RT and DAPI mounted (Vector laboratories, H-1200). Combined images of DAPI, Alexa 488, Alexa 568 and Alexa 647 were taken using a Zeiss Axio Observer.
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