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4 protocols using mouse igg2b pe

1

Pluripotency Marker Analysis in Cell Aggregates

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For flow cytometric analyses, the cultured aggregates were dissociated into single cells with TrypLE select and fixed with 4% PFA for 20 min at room temperature. Fixed cells were washed with phosphate buffered saline (PBS) containing 3% fetal bovine serum (FBS). To permeabilize for staining to intracellular protein markers, cells were treated in methanol on ice overnight. After blocking with 3% FBS/PBS, the cells were stained with antibodies; anti-OCT4-PE (653704, Biolegend, USA), and anti-Nanog-Alexa Fluor® 647 (674010, Biolegend, USA). These samples were compared to the samples of cells stained with isotype controls; mouse IgG2b-PE (400314, Biolegend, USA), mouse IgG1-Alexa Fluor® 647 (400136, Biolegend, USA). Flow cytometry data were acquired using a Guava® EasyCyte HT flow cytometer (Merck Millipore, USA) and analyzed using Guava®-InCyte software (Merck Millipore, USA).
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2

Multicolor Flow Cytometry for Immune Cell Profiling

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Samples were resuspended in FACS buffer (2% FBS, 0.1% sodium azide) and stained with the following mixtures of Biolegend antibodies: BDCA1-Percp/Cy5.5, CD14-APC, HLADR-Pacific Blue, CD3/19/56-FITC, CD123-PE/Cy7, and either FcεRIα-PE or mouse IgG2b-PE, all at manufacturer's recommended concentrations. Some samples were stained with CD45-A700 to identify hematopoietic cells and CD203c-biotin (Biolegend, at manufacturer's recommended concentrations) followed by streptavidin-A647 (Invitrogen, at manufacturer's recommended concentration) to identify mast cells. Cells were stained with antibodies and propidium iodide (PI) (Biolegend) at 1∶400 for 15 minutes at 4 degrees, washed and spun at 1300 rpm, and resuspended in FACS buffer. At least 1×106 cells were run on slow or medium speed on a BD LSRII machine and analyzed with Flowjo software.
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3

PD-L1 and PD-L2 Expression on CETCs

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The analyses of PD-L1 and PD-L2 expression on the CETCs were performed with an extended maintrac® approach. For PD-L1 expression analysis we used an anti-human PD-L1 phycoerythrin (PE)-conjugated antibody (clone 29E.2A3, BioLegend, San Diego, USA) at a final concentration of 0.2 μg/ml and for PD-L2 we used an anti-human PD-L2 Alexa Fluor® 350 conjugated antibody (clone 176611, novus biologicals, Littleton, USA) at a final concentration of 2 μg/ml. The corresponding isotypic controls for PD-L1 (Mouse IgG2b PE, BioLegend, San Diego, USA) and PD-L2 (Mouse IgG2b Alexa Fluor® 350, Novus biologicals, Littleton, USA) were used at the same final concentration. Finally, cells were visually inspected looking for a green, red and blue surface staining, but also a well-preserved nucleus (Figure 8a, 8b). For excluding expression of PD-L1/PD-L2 on hematopoetic cells we additionally performed staining with EpCAM-FITC, PD-L1-PE/PD-L2-Alexa Fluor® 350 and CD45-Pacific blue/CD45-PE antibodies (Figure 11, 12). The results for PD-L1 and PD-L2 were calculated as percentage of total number of CETCs.
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4

Quantifying p53 Expression in Cells

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Cells were cultured in 6-well trays and treated with drugs as described above. After 24 and 48 hours of treatment, cells were fixed and permeabilised using Nuclear Factor Fixation and Permeabilization Buffer Set (Biolegend, CA, USA) according to the manufacturer's instructions. 2×105 cells were labelled either with anti-p53-PE or mouse IgG2b-PE (1 μg/mL; Biolegend) and the cells were sorted and the data were acquired on an LSRII, and the data were analysed using FlowJo software.
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