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4 protocols using nf κb p65 c22b4

1

Immunoblot Analysis of Stress Signaling

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MEF were grown in 6-well plates to confluency and treated for up to 4 hrs with HSL-C12 or 1 hr with 1 μM thapsigargin and then lysed in M-PER mammalian protein extraction reagent (Pierce, Rockford, IL) containing 5 μg/ml leupeptin, 5 μg/ml pepstatin, 1 mM phenylmethylsulfonyl fluoride, and 50 nM calyculin A. Protein sample concentrations were determined with Bradford reagent (Bio-Rad, Hercules, CA). Immunoblot analysis was performed by first separating protein (10 to 50 μg/lane) by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferring it to nitrocellulose membranes. Individual gels with identical loading were run side by side when multiple primary antibodies were utilized. Membranes were blocked (5% nonfat dried milk) in 20 mM Tris-HCl (pH 7.5)−150 mM NaCl-0.1% Tween 20 for 1 hr and then incubated with specific antibodies overnight. Primary antibodies (diluted 1:1,000 in blocking buffer) for phosphoS51- eI-F2α (119A11), eI-F2α (9722), IκBα (L35A5), and NF-κB p65 (C22B4) were acquired from Cell Signaling (Danvers, MA). Binding of primary antibodies was visualized by enhanced chemiluminescence with horseradish peroxidase-conjugated secondary antibodies (1:2,500 in blocking buffer) and Renaissance Chemiluminescence Reagent Plus (Perkin-Elmer Life Sciences). Quantitation was performed with ImageJ (National Institutes of Health, Bethesda, MD).
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2

Synthetic LXR Ligand GW3965 Protocol

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Synthetic LXR ligand 3-[3-[N-(2-Chloro-3-trifluoromethylbenzyl)-(2,2-diphenylethyl) amino] propyloxy] phenylacetic acid hydrochloride (GW3965) was kindly donated by Jon Collins (GlaxoSmithKline, Research Triangle Park, NC). Dihydroethidium (DHE) and TRIzol Reagent were from Life Technologies (Carlsbad, CA). Mouse monoclonal antibody against LXRα (ab41902) and rabbit polyclonal antibody against LXRβ (ab28479) were from Abcam (Cambridge, UK); rabbit anti-mouse nitrotyrosine antibody (06-284) was from Millipore (Billerica, MA); rabbit anti-cleaved caspase-3 (5A1E, #9664), rabbit anti-nuclear factor kappa-light-chain-enhancer of activated B cell p65 (NF-κB p65, C22B4; #4764), rabbit anti-Akt (#9272), rabbit anti-phospho-Akt (D9E, Ser473, #4060), rabbit anti-p38 mitogen-activated protein kinase (p38 MAPK, #9212), rabbit anti-phospho-p38 MAPK (D3F9, Thr180/Tyr182, #4511), rabbit anti-c-Jun N-terminal kinase (JNK, 56G8, #9258), rabbit anti-phospho-JNK (81E11, Thr183/Tyr185, #4668), rabbit anti-Histone H3 (#9715) and rabbit anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 14C10, #2118) were from Cell Signaling Technology (Beverly, MA). IRDye 800CW goat anti-mouse (926-32210) and anti-rabbit IgG (926-32211) secondary antibodies were from LI-COR Biosciences (Lincoln, NE).
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3

Immunodetection of Signaling Proteins

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GSTM1(1H4F2) (IHC and western): Novus Biologicals, LLC. (NBP2-22186); STAT3(C-20): Santa Cruz Biotechnology, Inc. (sc-482); Phospho-STAT3 (pSer727) Cell Signaling Technology, Inc. (#9134); p38 MAPK: Cell Signaling Technology, Inc. (#9212); Phospho-p38 MAPK (Thr180/Tyr182): Cell Signaling Technology, Inc. (#9211); NF-κB p65 (C22B4): Cell Signaling Technology, Inc. (#4764); NF-kB phospho-p65 (Ser536)(93HI): Cell Signaling Technology, Inc. (#3033); β-Actin Antibody (C4): Santa Cruz Biotechnology, Inc. (sc-47778).
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4

Western Blot Analysis of Protein Expression

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Whole cell lysate (30 μg/lane), nuclear (10 μg/lane), and cytoplasmic (30 μg/lane) fractions were loaded to a SDS-PAGE gel (Invitrogen, Carlsbad, CA, USA) and separated by electrophoresis. After transfer of the separated proteins onto a piece of PVDF membrane (Millipore, Billerica, MA, USA), the membrane was probed by Western blot. Briefly, the membrane was blocked with 5% nonfat milk for 1 h at room temperature, reacted with a primary antibody (1:1000–2000 dilution) overnight at 4 °C, and followed by incubating at room temperature for 1 h with an HRP-conjugated anti-rabbit IgG secondary antibody (Abmart, Berkeley Heights, NJ, USA). The following primary antibodies were used: IRF-1 (B-1), IRF-8 (C-19) (Santa Cruz Biotech, Santa Cruz, CA, USA), NF-κB p105/p50 (#3035), NF-κB p65 (C22B4), I-κBα (#9247), IRF-3 (D83B9), lamin B1 (D4Q4Z) (Cell Signaling, Beverly, MA, USA), IRF-5 (10T1) (Abcam, Cambridge, MA, USA). The membranes were developed using Immobilon™ Western Chemiluminescent HRP Substrate (Millipore) and the images were acquired using The G-Box fluorescence and Chemiluminescence of imaging system (Syngene, England).
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