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2 protocols using alexa fluor 680 donkey anti goat

1

Immunoblotting of Parkinsonian Neuroinflammation

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Mice were sacrificed three days after MPTP treatment and the SN was dissected out. SN lysates containing equal amounts of protein were loaded in each lane and separated in a 10-15% SDS-polyacrylamide gel, as described previously (Jin et al., 2011 (link)). Proteins were transferred to a nitrocellulose membrane and nonspecific binding sites were blocked with Licor Odyssey blocking buffer. The membranes were then incubated with different primary antibodies such as anti-IBA-1 (Abcam), anti-GFAP (EMD Millipore), anti-iNOS (Santa Cruz), anti-gp91phox (Abcam), anti-3NT (EMD Millipore) and anti-4HNE (R & D Systems). Next, membranes were incubated with one of the following secondary antibodies: Alexa Fluor 680 goat anti-mouse, Alexa Fluor 680 donkey anti-goat (Invitrogen) or IR dye 800 donkey anti-rabbit (Rockland). To confirm equal protein loading, blots were reprobed with a β-actin antibody (Sigma; 1:10000 dilution). Western blot images were captured with a Licor Odyssey machine (Licor, NE), and the bands were quantified using NIH ImageJ software.
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2

Quantitative Western Blot Analysis

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Wandering third instar VNCs from 20 larvae were homogenized in 100 μL of lysis buffer (20 mM HEPES, 10 mM EDTA, 100 mM KCl, 0.1% (v/v) Triton X-100, 5% (v/v) glycerol) with a protease inhibitor cocktail (Roche, 04693132001) combined with a protease and phosphatase inhibitor cocktail (Abcam, ab201119). All samples were then sonicated and run in 4% to 15% Mini-PROTEAN TGX Stain-Free Precast Gels (BioRad, 4568083) alongside Precision Plus Protein all blue prestained protein standards (BioRad, 1610373). Next, total protein was transferred to PVDF membranes using a Trans-Blot Turbo system (BioRad). After transfer, the membrane was blocked by TBS intercept blocking buffer (LiCOR, 927–60000) for 1 hour at RT. The blocked membranes were incubated with primary antibodies overnight at 4°C. Antibodies used include rabbit anti-Csw (Lizabeth Perkins, F1088, 1:500) and goat anti-GAPDH (Abcam, ab157157, 1:2,000). The membrane was washed with Tris-buffer saline with 0.1% Tween-20 (TBST) and then incubated with secondary antibodies for 40 minutes at RT. Secondary antibodies used include Alexa Fluor 680 donkey anti-goat (Invitrogen, A21084, 1:10,000) and Alexa Fluor 800 goat anti-rabbit (Invitrogen, A32735, 1:10,000). After washing with TBST (3X, 10 minutes), the membranes were imaged using the Li-COR Odyssey CLx system.
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