The largest database of trusted experimental protocols

3 protocols using h3k9me2

1

Nuclear Protein Western Blot Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Specifically, for the Western blot of nuclear proteins, the nuclei of cells were isolated using Nucleoprotein Extraction Kit (Cat: C500009, Sangon Biotech, Shanghai, China). After quantified with Pierce™ BCA Protein Assay Kit (Cat: 23225, ThermoFisher Scientific, Waltham, MA USA), equal protein samples were resolved in 10% SDS-PAGE gel. Then, the separated proteins were transferred onto nitrocellulose filter (NC) membrane. After blocked in 5% non-fat milk/PBS for 1 h at room temperature, the membranes were washed with TBST for 3 × 5 min and then incubated with primary antibody at 4ºC overnight. The next day, the membranes were washed with TBST for 3 × 5 min at room temperature, and then were probed with the HRP (peroxidase)-conjugated secondary antibody at room temperature for 1 h. Signals were detected using Pierce ECL Western Blotting Substrate (Cat: 32106, ThermoFisher Scientific, Waltham, MA USA) on Tanon 5200 multi-automatic image analysis system (Tanon, Shanghai, China). The protein bands were quantified using ImageJ software. Primary antibodies of EHMT2 (Cat: #3306), β-Actin (Cat; #3700), β-catenin (Cat: #8480) were purchased from Cell Signaling Technology (Danvers, USA). H3K9me2 (Cat: 49-1007) was purchased from ThermoFisher Scientific (Waltham, MA USA).
+ Open protocol
+ Expand
2

Epigenetic Changes in Huntington's Disease

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates of NPC cell pellets (Control, 45Q, and 81Q) were prepared using RIPA lysis buffer (RIPA Buffer, 1 mM PMSF, 5 μm Z-VAD, 1 mM NaVan, and 1 × Complete Protease Inhibitor Mixture tablets). Protein lysates were sonicated for 2 cycles of 30 s on, 30 s off. 35 μg of protein lysates were separated on 10% TGX FastCast gel (Biorad) and transferred on nitrocellulose membranes (Biorad). The following primary antibodies were used: CUL4A (1:1000; Proteintech Cat# 14851-1-AP, RRID:AB_2261175), H3 (1:2500, Abcam Cat# ab1791, RRID:AB_302613), H3K27me3 (1:500, Millipore Cat# 07-449, RRID:AB_310624), H3K9me1 (1:500; Thermo Fisher Scientific Cat# MA5-33385, RRID:AB_2815523), H3K9me2 (1:500; Thermo Fisher Scientific Cat# 720092, RRID:AB_2532802), and β-actin (1:5000; Sigma-Aldrich Cat# A5441, RRID:AB_476744) (Supplemental Table S1). Antibody validation proved by venders. Membranes were incubated with primary antibodies at 4 °C overnight. The following secondary antibodies (1:5000) were used: IRDye® 680RD Goat anti-Rabbit IgG and IRDye® 800RD Goat anti-Mouse IgG (LI-COR). The membrane was imaged using the LI-COR Imaging System and Odyssey V3.0 software (LI-COR), followed by intensity analysis with GelAnalyzer. Statistical significance was tested using a two tailed t-test with a P-value threshold of 0.05.
+ Open protocol
+ Expand
3

Protein Expression and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein levels were quantified by Bradford assay. The protein sample was diluted, heated for denaturation, then subjected to dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and transferred onto polyvinylidene fluoride membranes (PVDF, Millipore). The membrane was blocked in 0.1% Triton X-100 for nuclear proteins and Tween 20 for cytoplasmic proteins, and 5% non-fat milk powder in phosphate-buffered saline for 1 h at 4°C. Primary antibodies against H3K4me1 (ThermoFisher), H3K4me2 ThermoFisher), H3K9me1 (ThermoFisher), H3K9me2 (ThermoFisher), Histone H3 (ThermoFisher), KDM1A (ThermoFisher), Vimentin (ThermoFisher), E-cadherin (ThermoFisher), N-cadherin (ThermoFisher), GAPDH (Abcam), and β-actin (Abcam) were then added, and membranes were kept incubating at 4°C overnight. Corresponding secondary antibodies were applied followed by electrochemiluminescence processing.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!