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7 protocols using protease and phosphatase inhibitors

1

Western Blot Analysis of Wnt/β-Catenin Pathway

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The HUVECs were seeded in a 6-well plate with a density of 2 × 105 cells per well. These cells were then treated with 1 μg/ml rhVEGF165 and combined with the previously indicated treatments. After 24 h of incubation, the cells were rinsed three times with PBS. The cell lysates were harvested with a lysis buffer with protease and phosphatase inhibitors (Sangon Biotech, China). After lysing on ice for 30 min, the cell lysates were centrifuged at 14,000 × g for 15 min at 4°C. The protein concentration was calculated using a bicinchoninic acid protein assay kit (Thermo Scientific, United States) and normalized. Thirty micrograms of protein were resolved with 6–10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electro-transferred to polyvinylidene fluoride membranes. The membranes were then blocked with a protein-free rapid blocking buffer (Epizyme, China) and immunoblotted with the following antibodies: rabbit monoclonal anti–β-catenin (Cell Signaling Technology, United States, 1:1000), rabbit monoclonal anti-Axin 1 (Cell Signaling Technology, United States, 1:1000), and rabbit monoclonal anti–β-actin (Cell Signaling Technology, United States, 1:1000). All quantitative data were normalized to β-actin as an endogenous control. ImageJ software was used to analyze the band intensity.
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2

Western Blot Protein Analysis

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Tissue or cell proteins were extracted using the RIPA lysis buffer (50 mM Tris HCl, pH 7.4, 150 mM NaCl, 1%NP-40, 0.5% sodium deoxycholate, 0.1%SDS) containing protease and phosphatase inhibitors (Sangon, Shanghai, China). Protein concentration was measured using the Bradford method. Equal amounts protein lysates were separated on SDS-PAGE and transferred to polyvinylidene difluoride membranes (Millipore). The membranes were blocked and incubated with primary antibodies against UCP1 (1:1000, Abcam), TPH1 (1:1000; Millipore), β-actin (Sigma-Aldrich) or GAPDH (1:1000; Cell Signaling Technology; Danvers, MA), followed by incubation with HRP-labeled goat anti-rabbit IgG as secondary antibody (1:5000, BOSTER, Wuhan, China). The protein bands were detected by ECL kit (Thermo Fisher Scientific, Rockford, IL) in ImageQuant LAS 4000 mini (GE Healthcare, Chicago, IL) and quantified using ImageQuant TL 7.0 software (GE Healthcare). Data were showed as the ratio of specific protein to β-actin.
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3

Western Blot Analysis of Cardiac Proteins

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Mechanically homogenised frozen hearts and fresh cell suspensions were lysed in RIPA buffer (Beyotime, China) with protease and phosphatase inhibitors (Sangon Biotech) on ice for 30 min. Protein concentrations were estimated using BCA assay (Beyotime) and subsequently adjusted to equal levels. Samples (30 μg) were loaded onto polyacrylamide gels and hybridised onto polyvinylidene difluoride membranes (Millipore, USA). Membranes were blocked with 5% BSA for 1 h and probed with the relevant primary antibodies for 16 h at 4°C. After washing, the membranes were incubated at room temperature for 1 h with appropriate secondary antibodies (CST, USA). The blots were developed using ECL (Millipore). The primary antibodies were GAPDH (CST, 5174), Cypher (Abnova, H00011155-M06), β-catenin (Abcam, 32572), β-catenin Ser675 (CST, 4176), β-catenin Ser552 (CST, 9566), β-catenin Ser33/37/Thr41 (CST, 9561), Gsk-3β (CST, 12456), Gsk-3β Ser9 (CST, 5558), vimentin (Abcam, 92547), vimentin Ser72 (Abcam, 52944), stathmin (Abcam, 52630), stathmin Ser16 (Abcam, 47382), troponin I (Abcam, 209809), troponin I Ser23+24 (Abcam, 190697), cyclin D1 (Abcam, 134175), c-Myc (Abcam, 32072), c-jun (Abcam, 32137), Myc (CST, 2276), Flag (Beyotime, AF519), and rabbit IgG (CST, 2729). The ImageJ software was used to quantify the relative protein levels.
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4

Comprehensive Protein Expression Analysis

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H9C2 cells or myocardial tissue were treated with RIPA lysis buffer containing protease and phosphatase inhibitors (Sangon Biotech, Shanghai, China), and total protein concentrations were measured using a BCA protein assay kit (Sangon Biotech, Shanghai, China). After denaturation at 95°C for 5 min in SDS sample buffer, proteins were separated on SDS-PAGE and transferred to PVDF membranes. The membranes were blocked with 5% (w/v) BSA for 1 h, followed by incubation overnight at 4°C with specific antibodies (all from Abcam, Cambridge, UK) against the following proteins: Bax (ab32503), BCL-2 (ab196495), pro-caspase 3(ab184787), cleaved-caspase 3 (ab214430), DRP-1 (ab184247), OPA-1 (ab42364), PGC-1 α (ab106814), SUCLA (ab202582), ACADL (ab129711), CD36 (ab133625), CPT-1 (ab234111), P-ACC (ab68191), ACC (ab45174), p-AMPK (ab133448), AMPK (ab207442), and GAPDH (ab181602). After washing, the membrane was incubated with an HRP-coupled secondary antibody for 60 min, washed again, and finally incubated with enhanced chemiluminescence (ECL) solution (Sigma, USA).
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5

Protein Extraction and Western Blot Analysis

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Proteins were extracted from samples of CL tissue at the four different developmental stages using a lysis buffer containing protease and phosphatase inhibitors (Sangon, Shanghai, China) according to the manufacturer’s instructions. Cell debris was removed by centrifugation at 4°C for 30 min at 17000 x g. A Bradford Protein Assay Kit (Sangon) and a Synergy Multi-Mode Microplate Reader were used to measure protein concentrations by determining the absorbance at 595 nm. Then, 40 μg of total protein was fractionated on a 12% SDS-PAGE gel and transferred to a polyvinylidene fluoride membrane for Western blot analysis. The membrane was then blocked with 5% BSA at room temperature for 1 h and probed with a goat polyclonal antibody (1:500; Abcam; ab87312) overnight at 4°C. The membrane was washed 2–5 times and then incubated with horseradish peroxidase-conjugated rabbit anti-goat IgG at room temperature for 60 min (Santa Cruz). The protein bands were visualized using SuperSignal, West, and Pico chemiluminescence substrates (Pierce, Rockford, IL, USA).
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6

Protein Extraction and Immunoblotting Protocol

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Total proteins were extracted from H9C2 cells or cardiac tissues using RIPA buffer (Solarbio, Beijing, China, R0020) supplemented with protease and phosphatase inhibitors (Sangon Biotech, Shanghai, China, C600387, and C500017, respectively). The following antibodies were used in this study: anti-Vps4a (Sigma, SAB4200215), anti-LC3 (Sigma, L8918), anti-p62 (CST, 5114), anti-GAPDH (Abclonal, Wuhan, China, AC002), anti-p-AKT (CST, Boston, MA, USA, 4060), anti-AKT (CST, 4685), anti-Myh7 (Santa, Dallas, TX, USA, sc-53090), anti-HRP conjugated goat anti-rabbit IgG polyclonal Ab (HuaBio, Hangzhou, China, HA1001), and anti-HRP conjugated goat anti-mouse IgG polyclonal Ab (HuaBio, HA1006). The immunoreactions were visualized with Super Signal West Pico PLUS (Thermo Fisher Scientific, Waltham, MA, USA, 34577) and imaged by Azure C400 Imaging Systems.
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7

Protein Extraction and Western Blotting from Brain Tissues

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Total protein from brain tissues homogenate or cells was extracted with RIPA lysis buffer (Solarbio, China) containing protease and phosphatase inhibitors (Sangon Biotech, China), and quanti ed according to our previous study [41] . In brief, 40 µg of total protein was electrophoresed on SDS-PAGE and transferred onto a PVDF membrane (Merck, Germany), and blocked with 5% bovine serum albumin (BSA) at room temperature for 1 hr. The membrane was incubated with primary antibodies β-actin, Bax, Bcl-2 (1:2000; Abcam, UK), AMD1, cytochrome C (1:1000; Proteintech, USA), cleaved caspase-9, cleaved caspase-3 (1:1000; Cell Signaling Technology, USA) overnight at 4 °C. After 3 washes with TBST, the membrane was incubated with HRP-conjugated secondary antibodies for 1 hr and visualized with ECL reagents (Millipore, USA). The density of each band was analyzed with Quantity One software (Bio-Rad, USA) and normalized by β-actin.
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