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21 protocols using sodium

1

Synthesis of Organophosphazene Compounds

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Hexachlorocyclotriphosphazene, 99% (Fushimi Pharmaceutical Co., Ltd., Marugame, Kagawa Prefecture, Japan). 4-Hydroxybenzaldehyde, 98%; allylamine, 98%; magnesium sulfate, anhydrous, ≥99.5%; dichloromethane, ≥99.5%; chloroform, anhydrous, ≥99%; tetrahydrofuran, anhydrous, ≥99.9%; sodium, 99.9%; ethanol, anhydrous, ≥99.5%; toluene, anhydrous, 99.8%; hexane, anhydrous, 95% (Sigma-Aldrich, Saint Louis, MO, USA).
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2

Urine Sample Preparation for NMR Metabolomics

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At the moment of urine collection patients were fasting for at least 6 hours. Centrifugation of samples at 13.000 rpm for 10 minutes at 4°C was followed by supernatants collection and 10 μL of a 10% w/w aqueous solution of sodium azide (NaN3) were added to 1 mL of supernatant. Samples were immediately frozen at -80°C until NMR analysis. For 1H NMR analysis, 1 mL of thawed urine was centrifuged again. An aliquot of 630 μl was mixed to 70ul of a 1.5 M phosphate buffer solution (pH = 7.4) in D2O (99.9%, Cambridge Isotope Laboratories Inc, Andover, USA) containing the internal standard sodium 3-(trimethylsilyl)propionate-2,2,3,3,-d4 (TSP, 98 atom % D, Sigma-Aldrich, Milan) at a 0.6 mM final concentration, and 650 μl of the obtained solution were transferred into a 5 mm NMR tube.
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3

Cell Culture Reagents Procurement

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All reagents used for cell cultures were purchased from Euroclone (Milan, Italy). Collagenase, sodium alginate, sodium dodecyl sulfate, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, 1,9-dimethylmethylene blue, DMSO, papain, interleukin-1β, sodium, and calcium chloride were obtained from Sigma-Aldrich (Milan, Italy).
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4

Synthesis of Carbon Nanomaterials from Nanodiamonds

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CNOs were obtained according to the method proposed by Kuznetsov,72 (link) in which diamond nanoparticles (NDs, Carbodeon µDiamond Molto) with a diameter of 4.2 ± 0.5 nm and a ND content of ≥97 wt% were annealed. All the chemicals and solvents were commercially available and used without further purification: nanodiamond powder (µDiamond®Molto, Carbodeon); 1,2-dicyanobenzene (∼98%, Sigma-Aldrich); ammonia solution (25% pure p.a., Sigma-Aldrich); maleimide (∼99%, Sigma-Aldrich); tetrahydrofuran (pure p.a., Avantor); 2-propanol (pure p.a., Avantor); acetone (99.5% pure p.a., Avantor); 2-mercapto-4-methyl-5-thiazoleacetic acid (∼98%, Sigma-Aldrich); zinc chloride (≥99%, Sigma-Aldrich); nickel(ii) chloride (∼98%, Sigma-Aldrich); copper(ii) chloride (∼97%, Sigma-Aldrich); hydrochloric acid (35–38% pure p.a., Avantor); sulphuric acid (95% pure p.a., Avantor); sodium chloride (pure p.a., Avantor); aluminium powder (∼99.99%, Avantor); sodium (Sigma); 1-octanol (≥95%, Sigma-Aldrich); potassium permanganate (Avantor); dimethyl sulphoxide (DMSO, pure p.a., Avantor); and methanol (99.5% pure p.a., Avantor).
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5

Graphene Feedstock Purification and Modification

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Few-layer graphene (FLG) feedstock was obtained from Cambridge Nanosystems UK, with a carbon purity >99.5% and an average lateral size of 1.2 μm. All the graphite starting materials were used without any further purification, though dried thoroughly as described below. Dimethylacetamide (DMAc, Sigma-Aldrich) was dried over 20 vol% 4 Å activated molecular sieves. Naphthalene (99%, Sigma-Aldrich) was dried under vacuum in the presence of phosphorus pentoxide before use. Sodium (99.95%, ingot), Sodium borohydride, bromo-thioanisole, aniline-2-sulfonic acid and potassium hexachloroplatinate were purchased from Sigma-Aldrich and used as received.
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6

Gelatin-Dextran Hydrogel Synthesis

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Materials: Gelatin (Gtn, type A from porcine skin, < 300 bloom), Dextran (Dex, Mn = 110,000), sodium (meta) periodate (> 99.0%), acrylic acid (99%), Chitosan (75–85% deacetylated, Mn = 50,000–190,000 Da), collagenase type IV were purchased from Sigma-Aldrich. All other chemicals were analytical grade and used without further purification. Endothelial growth media-2 (EGM-2) was purchased from Lonza and used for ECFCs culture. Dulbecco’s phosphate-buffered saline (DPBS), fetal bovine serum (FBS) and trypsin were all purchased from Gibco, Invitrogen. Dialysis membrane (molecular cutoff = 3500 Da) was purchased from Spectrum Laboratories.
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7

Neural Stem Cell Encapsulation in Alginate

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Neural stem cells were cultured in alginate (Sigma-Aldrich, St. Louis, MO, USA) scaffold for 7 days at a concentration of 4,000 cells/well. The sterile sodium alginate was dissolved in DMEM/F12 (alginate concentration 0.25%) and resuspended with 4,000 cells in 40 µL. The solution was then transferred to 96-well plates and 100 µL of chilled CaCl2 (Sigma-Aldrich) at 10 mM was added, and the cells were kept on ice for 10 minutes. Subsequently, 50 µL of the suspension were removed and the neural stem cells culture media and laminin at 5 µg/mL was added to each well. For releasing the encapsulated neural stem cells, the scaffold was washed with PBS and a solution containing 15 mM sodium citrate and 150 m MNaCl (Sigma-Aldrich) was added and the cells were incubated in 37℃ for 1 hour [14 (link)].
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8

Synthesis and Characterization of Novel Compounds

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Malonic acid, tetrahydrofuran (THF), pyridine, piperidine, the deuterated solvent (DMSO-d6) for NMR analysis, polyvinyl alcohol (PVA), hydrochloric acid, 4-hydroxybenzaldehyde, ethanol, sodium, chloroform, potassium hydroxide, and silver nitrate were products of Sigma Aldrich (Saint Louis, MO, USA). Collagen types I and II were purchased from Proteintech Group Inc. (Chicago, IL, USA). Microbial strains were purchased from BioVitrum (Saint Petersburg, Russia). The antibiotic Nitox was purchased from NITA-FARM (Saratov, Russia).
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9

Fluorescent Calcium Imaging in Cells

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FURA 2-AM (FURA-2-pentakis (acetoxymethyl) ester), PBS (Phosphate Buffered Saline), Triton X-100, EGTA (ethylene glycol-bis (β-aminoethyl ether), sodium, hydrogen peroxide (H2O2), sodium chloride (NaCl), potassium chloride (KCl), magnesium chloride (MgCl2), glucose, Hepes, and dimethyl sulfoxide (DMSO) were acquired from the Sigma-Aldrich corporation (St. Louis, MO, USA). Any other chemicals and reagents (reagent grade) were of the highest quality, and obtained from reputable, commercial sources.
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10

Synthesis of Conjugated Polymers

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Sodium, FeCl3, 2-methyl-2-butanol, 2-ethyl hexyl bromide, Pd(PPh3)4, CuI, (i-Pr)2NH, ethynyltrimethylsilane, N-bromosuccinimide, 3,4-ethylenedioxythiophene, and 2,5-dibromothiophene were purchased from Sigma-Aldrich. DMF and 2-carbonitrile thiophene were purchased from Alfa Aesar Co. Tetrahydrofuran, dichloromethane, toluene, methanol, ethyl acetate, hexane, CHCl3, and potassium carbonate were purchased from Samchun Pure Chemicals. Tetrahydrofuran (THF), diethyl ether, toluene, and methylene chloride were used after distillation in the presence of Sodium/benzophenone or calcium hydride under nitrogen gas.
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