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116 protocols using peroxidase

1

Monitoring ROS Production in Plants

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Reactive oxygen species (ROS) production was monitored with an L-012/peroxidase-based assay on leaf discs collected from N. benthamiana, soybean, tomato, and Arabidopsis plants. The leaf discs were floated overnight on 200 μL of ddH2O in a 96-well plate. The ddH2O was replaced with a working solution [20 μM L-012 (Waco), 20 μg/mL peroxidase (Sigma-Aldrich), 1 μM flg22 (Sangon), or 1 μM purified protein reaction solution]. After the addition of the working solution, the plate was immediately moved to a GLOMAX96 microplate luminometer (Promega, Madison, WI, USA) for measurement of luminescence.
ROS detection in soybean leaves in response to zoospores of different P. sojae strains was monitored with an L-012 /peroxidase-based assays as previous reported with some minor modifications63 (link). Briefly, Leaf discs was collected from 2-week-old soybean plants and then floated overnight on 200 μL of ddH2O in a 96-well plate. The ddH2O was replaced with a working solution [20 μM L-012 (Waco), 20 μg/mL peroxidase (Sigma-Aldrich), zoospores (10000 zoospores per mL) of WT, PsRLK6-knockout (ΔPsRLK6) or PsRLK6-GFP overexpression transformants (OT-24). After the addition of the working solution, the plate was immediately moved to a GLOMAX96 microplate luminometer (Promega, Madison, WI, USA) for measurement of luminescence.
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2

Immunofluorescence and Western Blot Antibodies

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Secondary antibodies for immunofluorescence microscopy: Chicken anti‐mouse immunoglobulins conjugated to Alexa488 (Invitrogen, Carlsbad, CA, USA, #A21200). Donkey anti‐mouse immunoglobulins conjugated to Alexa568 (Invitrogen, #A10037). Donkey anti‐rabbit immunoglobulins conjugated to Alexa568 (Invitrogen, #A10042). Chicken anti‐rabbit immunoglobulins conjugated to Alexa488 (Invitrogen, #A21441). Goat anti‐mouse immunoglobulins conjugated to Alexa647 (Invitrogen, #A21236). Monovalent Fab fragments rabbit anti‐mouse [unconjugated; Fab rabbit anti‐mouse IgG (H&L); Rockland Immunochemicals, #810‐4102 via Biomol GmbH, Hamburg, Germany], used for immunofluorescence microscopy in a 1:50 dilution. Chicken anti‐goat immunoglobulins conjugated to Alexa594 (Invitrogen, #A21468). Secondary antibodies for Western blot analyses: goat anti‐rabbit immunoglobulins conjugated to peroxidase (Sigma, #A6154), used in a 1:5,000 dilution for Western blot analyses; goat anti‐mouse immunoglobulins conjugated to peroxidase (Sigma, #A3673), used in a 1:5,000 dilution for Western blot analyses.
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3

Flg22-Triggered ROS and MAPK Assays

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Flg22-triggered ROS generation was monitored as described earlier (Felix et al., 1999 (link)). ROS production was induced with 200 nM flg22 and measured with help of a luminol/peroxidase solution [250 μM luminol (Sigma), 10 μg/ml peroxidase (Sigma)]. Apoplastic fluid derived from N. benthamiana plants that produced dspFo3, spFoa3 or spGFP was infiltrated into leaves of 4–5-week-old N. benthamiana plants and 3 h later leaf discs were excised and kept overnight on MQ. Flg22-triggered ROS production was measured the next morning.
Flg22-triggered MAPK activation was performed as described previously, with a few modifications (Flury et al., 2013 (link)). Three days after Agro-infiltration, N. benthamiana leaves were infiltrated with 0.5 μM flg22 or MQ and 10 min later leaf discs corresponding to 15 mg leaf material were collected and immediately frozen in liquid nitrogen. Total protein was isolated as described earlier and MAPK activation was monitored by Western blot using an anti-p44/p42 MAPK antibody (D13.14.4E; Cell Signaling Technology). Apoplastic fluid derived from N. benthamiana plants that produced dspFo3, spFoa3 or spGFP was infiltrated into leaves of 4–5-week-old N. benthamiana plants and 3 h later 1 μM flg22 or MQ was infiltrated. Ten minutes after flg22 treatment, leaf discs were collected, frozen in liquid nitrogen, and processed as described above.
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4

Rat Liver Amine Oxidase Activity Assay

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Determination of amine oxidase activity in the presence of the tested compounds was performed in rat liver homogenates, as described previously [33 (link)]. A 30% liver homogenate in 50 mM Tris-HCl buffer, pH = 9.0, was incubated in 96-well plates for 1 h at 37 °C with 150 U/mg peroxidase (Sigma-Aldrich, St. Louis, MO, USA) in the presence of 10 μM test compounds. O-dianisidine (Sigma-Aldrich), Spd·3HCI (Sigma-Aldrich, St. Louis, MO, USA) and Spm·4HCI (Sigma-Aldrich, St. Louis, MO, USA) were then added to a final concentration of 10.7 μM. The mixture was incubated again for 30 min, and the optical density was measured at 540 nm (Novaspec III, Amersham Biosciences, Amersham, UK). The activity of polyamine oxidases in samples was assessed based on the calibration curve per unit of protein. The protein assay was performed according to the Bradford method [51 (link)].
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5

Enzymatic Determination of Metabolites

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Monosodium L-glutamate (MSG), 5, 5-dithiobis-2-nitrobenzoic acid (DTNB), acetyl thiocholine (ATC), glucose oxidase, peroxidase, Cholesterol standard, 4-aminophenazone, thiobarbituric acid (TBA), bovine serum albumin (BSA), glycyrrhizin were purchased from Sigma-Aldrich, Bangalore. Spirulina was purchased from Parry Neutraceuticals, Chennai. Enzyme-linked immunosorbent assay (ELISA) kit for estimation of rat serum leptin levels was purchased from SPI bio Bertin Pharma, France. All other reagents used were of analytical grade and obtained locally.
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6

ELISA to Assess RBD-specific Antibodies

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An enzyme-linked immunosorbent assay (ELISA) was performed as previously described [26] . Briefly, RBD served as a solid-phase antigen, and the serum obtained from each mouse was serially diluted in duplicate. Immunoenzymatic assays were performed using mouse anti-IgG antibodies conjugated to peroxidase (Sigma-Aldrich, USA). Additionally, IgG subclass responses were assessed using immunized mouse sera treated with anti-IgG1 (Sigma-Aldrich, St. Louis, MO, USA) or anti-IgG2c (SouthernBiotech, Birminghan, USA) antibodies conjugated to peroxidase. To evaluate the strength of antigen-antibody interaction in ELISA, a step involving incubation with increasing concentrations of ammonium thiocyanate (0–4 M), prior to incubation with secondary antibodies (conjugated to peroxidase), was added to the regular protocol.
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7

Comprehensive Chemical Reagents for Analytical Protocols

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The following chemicals were supplied from Sigma-Aldrich Co. (St. Louis, MO, USA): hydrochloric acid, ammonium hydroxide (28–30% v/v), ethanol (95% v/v), sodium nitrate (≥98% w/w), sulfuric acid (20% v/v), sodium thiosulfate solution (0.10 N), sodium acetate buffer pH 5.30, potassium hexacyanoferrate(II) trihydrate, sodium acetate trihydrate (≥98.5% w/w), zinc acetate dehydrate (≥98% w/w), sodium bisulfate, sodium metabisulfite (≥97.0% w/w), D-(−)-fructose, sucrose, D-(+)-glucose, peroxidase from horseradish type II, and o-dianisidine (peroxidase substrate). From Merck (Germany), the following were obtained: potassium iodide for analysis EMSURE® ISO, Reagent Ph Eur, starch (soluble guaranteed reagent for analysis), phosphate buffer pH = 6.50, and hydrogen peroxide (30% v/v). Sodium chloride was supplied from Penta (Czech Republic), glycerol standard reference from Hanna Instruments (Gunstock, Rhode Island, USA), and acetonitrile Chromasolv™, for HPLC, gradient grade (≥99.9%) from Honeywell, Riedel-de Haën.
Ultrapure water of HPLC grade from an ultrapure water purification system with resistance of 12–18 μΩ-cm was used throughout.
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8

Guanine Deaminase Assay in HEK293 Cells

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HEK293 cells were plated at 1 million cells/well of 6 wells plate on DIV0 and transfected with indicated plasmids using Lipofectamine 2000 (Invitrogen) on DIV1. Cells were lysed in GDA lysis buffer (150 mM NaCl, 25 mM Tris–HCl, pH 7.4 and 1 mM PMSF) on DIV3 to prepare lysate. 50 μg of lysate was subjected to guanine deaminase assay using GDA lysis buffer containing 0.025 U/ml xanthine oxidase (Sigma), 0.002 U/ml peroxidase (Sigma), 50 μM Amplex Red reagent (Molecular Probes), and 16 mM guanine (Sigma). Samples were centrifuged at 9500 x g for 1 min at to remove insoluble guanine. Negative control without guanine were also used. All samples were incubated at 37°C and absorbance was recorded at 571nm using a single beam Genesys 10 UV/vis Spectrophotometer (Spectronic, UK) at indicated time intervals [4 (link),44 (link)].
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9

Cross-linking of AlIbpA protein by GA

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The chemical cross-linking by glutaraldehyde (GA) was performed as described in46 (link) with modifications. Proteins were dialyzed overnight in a PBS pH 7.4. The reaction mixture consisted of 1.5 μg μl−1 of dialyzed AlIbpA protein and 0.05% (w/w) freshly prepared solution of glutaraldehyde. The reaction was performed at 25 °C for 20 minutes and then stopped by the addition of 100 mM Tris pH 7.4. The samples were further analyzed by immunoblotting with AlIbpA-specific antibodies obtained previously40 (link) and developed by using anti-rabbit antibodies conjugated with peroxidase (SigmaAldrich cat. no A0545).
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10

Immunoblot Analysis of Bacterial Proteins

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Immunoblots were done as described [60 ]. Rabbit polyclonal antibodies α-MglA [23 (link)], α-MglB [23 (link)], α-PilC [20 (link)] and α-RomY antibodies were used together with goat anti-rabbit immunoglobulin G conjugated with horseradish peroxidase (Sigma) as secondary antibody. Monoclonal mouse anti-polyHistidine antibodies conjugated with peroxidase (Sigma) were used to detect His6 tagged proteins. To generate rabbit, polyclonal α-RomY antibodies, purified His6-RomY was used to immunize rabbit as described [60 ]. Blots were developed by using Luminata Crescendo Western HRP Substrate (Millipore) and visualized using a LAS-4000 luminescent image analyzer (Fujifilm).
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