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5 protocols using donkey anti goat secondary antibody

1

Immunohistochemistry of Melanoma Tissue Samples

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The human melanoma tissue microarray (TMA number ME1004A) was purchased from US Biomax, Inc. (Rockville, MD, USA). The melanoma TMA was deparaffinized and antigen retrieval was performed using extended CC1 treatment (Cell Conditioning Solution, Ventana Medical Systems, Oro Valley, AZ). The goat polyclonal antibody for AXL (R&D) was applied and incubated at 37°C for 1 or 2 hours. Donkey anti-goat secondary antibody (Jackson ImmunoResearch Laboratories, West Grove, PA) was then applied and incubated at 37°C for 60 min, followed by chromogenic detection using the DAB Map kit (Ventana Medical Systems, Oro Valley, AZ). Slides were counterstained with Hematoxylin and dehydrated and cleared before coverslipping from Xylene. RUNX2 staining was done as previously described [14 (link)].
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2

Fos and Orexin Immunohistochemistry in Hypothalamus

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Sections from the hypothalamus were processed for Fos immunohistochemistry as done previously (Mahler and Aston-Jones, 2012 (link)). Briefly, every 6th section through the hypothalamus was selected to visualize orexin neurons throughout the longitudinal axis of the lateral hypothalamus. Sections were incubated in a rabbit anti-Fos primary antibody overnight (1:1000; Millipore ABE457), followed by 2 hours in a donkey anti-rabbit secondary (1:500, Jackson ImmunoResearch Laboratories, West Grove, PA). The same sections from the hypothalamus were then processed for Orx-A immunohistochemistry in a goat anti-Orx A primary antibody overnight (1:1000, Santa Cruz Biotechnology, Santa Cruz, CA) and then incubated for 2 hours in a donkey anti-goat secondary antibody (1:500, Jackson ImmunoResearch Laboratories, West Grove, PA).
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3

Lentiviral Transduction of SARS-CoV-2 Spike Variants

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293T cells were transfected with Invitrogen™ ViraPower™ Lentiviral Packaging Mix as followed: 2×106 293T cells were seeded the day before and mixed with 1ml Optimal MEM transfection solution with 45μl Genejuice (Millipore) containing 3.75μg pCMV-dR8.91, 2.5 μg pMD2.G-VSVG, and either 4.17 μg CHC16-pHR_hACE2_mCherry, CHC17-pHR_SARS-CoV-2 Swt_EGFP or CHC-18-pHR_SARS-CoV-2 S-Δ19_EGFP at RT for 15 mins, and then incubated with fresh D10 medium (10% FBS in DMEM without antibiotics) at 37°C and 5% (v/v) CO2 for 12 hours. Transfected 293T cell media was changed after 24 hours and incubated for another 48–72 hours. The lentivirus supernatant was harvested, filtered (0.45 μm filter Millipore) and transduced into 293T, A549, HepG2, and SK-Hep1 cells with serum-free DMEM for 12 hours. The transduced cell media was changed with fresh complete antibiotic-containing D10 medium for another 48–72 hours. Transduced cells were flow-sorted by GFP/mCherry expression, or protein expression determined by anti-Spike protein RBD domain antibody (rabbit IgG, Sino Biological) or anti-hACE2 antibody (goat IgG, R & D Systems) followed by fluorophore-conjugated goat anti-rabbit (Invitrogen) or donkey anti-goat secondary antibody (Jackson Immuno Research). Co-culture transduced cell lines were performed as listed in Table 1.
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4

Quantifying DUX4 Protein Expression

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HEK293 cells were co-transfected (Lipofectamine 2000) with a CMV.DUX4.V5 expression vector containing the DUX4 3′ UTR and U6.miDUX4s or control U6.miLacZ in a 1:5 molar ratio. Protein was extracted in M-PER Mammalian Protein Extraction Reagent (Thermo Fisher Scientific) 24 hr later and quantified using the DC Protein Assay (Bio-Rad). Fifteen microgram samples were separated on 12% SDS-PAGE, transferred to nitrocellulose membrane, and incubated with the following antibodies: mouse monoclonal antibody to V5 (horseradish peroxidase [HRP]-coupled) (1:5,000, R961-25; Invitrogen); mouse monoclonal GAPDH antibody (1:1,000, CB1001; Millipore), or goat polyclonal GAPDH (1:500, ab9483; Abcam) overnight at 4°C. GAPDH-probed blots were washed and then incubated with HRP-coupled goat anti-mouse or HRP-coupled donkey anti-goat secondary antibody (1:100,000, 115-035-003 and 705-035-147; Jackson ImmunoResearch) for 1 hr at room temperature. Following washes, blots were developed using Immobilon Western HRP substrate (Millipore) and exposed to film. DUX4.V5 quantification was assessed using ImageJ.
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5

Immunofluorescence Imaging of Chlamydia

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McCoy cells were cultured on glass coverslips in 24-well tissue cultures plates and infected with relevant strains at an MOI of 0.3. All cells were fixed in 100% methanol. Organisms were stained using a primary goat antibody specific to C. trachomatis major outer membrane protein and a donkey anti-goat secondary antibody conjugated to Alexa Fluor 488 (Jackson Labs, Bar Harbor, Maine). Images were acquired on a Zeiss Axio Imager.Z2 equipped with an Apotome2 using a 100× lens objective.
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