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Anti-tubulin is a laboratory reagent used to detect and visualize microtubules, which are essential cytoskeletal structures found in eukaryotic cells. It is a monoclonal antibody that specifically binds to tubulin, the protein subunit that makes up microtubules. This allows researchers to study the organization, dynamics, and functions of microtubules in various cell types and experimental contexts.

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12 protocols using anti tubulin

1

Comprehensive Histone Modification Profiling

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The following antibodies were used in this study: anti-H3K4me1 (generated in-house), anti-H3K4me2 (generated in-house), anti-H3K4me3 (generated in-house), anti-H3K27ac (Cell Signaling, 8173), anti-H3 (generated in-house), anti-SMC1A (Bethyl Laboratories, A300-055A), anti-SET1A (generated in-house), anti-MLL1 (Cell Signaling, 14689), anti-MLL2 (generated in-house), anti-MLL3 (generated in-house), anti-MLL4 (generated in-house), anti-RBBP5 (Bethyl Laboratories, A300-109A), anti-HSP90 (Santa Cruz Biotechnology, 7947), and anti-tubulin (Developmental Studies Hybridoma Bank, E7).
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2

Legionella Infection and UBE2N Modification

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Legionella strains used in this study were derivatives of Philadelphia 1 strain Lp02 and were grown and maintained on charcoal-yeast extract (CYE) plates or in ACES-buffered yeast extract (AYE) broth as described earlier52 (link). Genes were inserted into pZL507 (ref. 53 (link)) for complementation experiments. Raw264.7 cells and U937 cells were purchased from ATCC were cultured in RPMI1640 medium supplemented with 10% FBS.
For infection experiments, all L. pneumophila strains were grown overnight in AYE broth to postexponential phase judged by the optical density of the cultures (OD600 nm = 3.2–3.8) and by increase in bacterial motility, then 0.2 mM IPTG was added into bacterial cultures to induce the expression of MavC and its mutants on pZL507 at 37 °C for 3 h before infection. Raw264.7 cells or differentiated U937 macrophages were infected with an multiplicity of infection (MOI) of 15 at 37 °C for 2 h. Infected cells washed three times with PBS were lysed with 0.2% saponin for 30 min on ice. Saponin-soluble fractions were probed with UBE2N and MavC-specific antibodies for the modified UBE2N and the translocated MavC, respectively.
Antibodies: Anti-UBE2N (Thermo Fisher Scientific, cat. no. 37-1100), 1:1000; anti-MavC26 (link), 1:5000; anti-tubulin (Developmental Studies Hybridoma Bank, E7) 1:10,000; anti-ICDH53 (link), 1:10,000.
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3

Quantitative Analysis of Protein Expression

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Mixed stage worms were lysed and solubilized in SDS lysis buffer (2% SDS, 100 mM NaCl, 10% glycerol, and 50 mM Tris HCl, pH 6.8) with sonication. Worm extracts were separated on SDS-PAGE and transferred onto PVDF membranes. The separated proteins were probed with anti-GFP (Cell Signaling Technology, Danvers, MA, #2956, RRID:AB_10828931) or anti-tubulin (Developmental Studies Hybridoma Bank, AA4.3, RRID:AB_579793) antibodies. Pixel intensities of GFP and tubulin bands were quantified using Adobe Photoshop CC 2015 (RRID:SCR_014199).
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4

Metacyclogenesis Induction in Trypanosoma Epimastigotes

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Epimastigotes from Y strain (15 x 106 cells) were subjected to the first period of metacyclogenesis in BHT medium (control) in the absence or presence of 100 μM spermidine for 2 h at 28°C or in TAU medium (starvation) for 2 h at 37°C. Cells were collected by centrifugation at 2000 g for 15 min, resuspended in sample buffer and incubated for 10 min at 95°C. Protein extracts were run on 18% SDS-PAGE and transferred to Hybond-ECL (Amersham) nitrocellulose membranes. The membranes were blocked in Blotto for 1 h at 4°C (10% non-fat milk, 0.05% Tween 80 in PBS), washed twice with 0.05% Tween 80 in PBS and incubated with a primary antibody anti-LC3 (1:800 dilution, Sigma-Aldrich) followed by a peroxidase-conjugated anti-rabbit secondary antibody (1:10,000 dilution). Anti-Tubulin (1:300 dilution, Developmental Studies Hybridoma Bank) was used to detect Tubulin (AN ESS55047) as a loading control. Detection was accomplished with a chemiluminescence system from Millipore (WBKLS, Biopore, Buenos Aires, Argentina) on a Luminescent Image Analyzer LAS-4000 (Fujifilm, Tokyo, Japan).
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5

Quantifying GFP Expression in C. elegans Mutants

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Mixed-stage worms were lysed and solubilized in SDS lysis buffer (2% (w/v) SDS, 100 mM NaCl, 10% (v/v) glycerol, and 50 mM Tris HCl, pH 6.8) with sonication. Total protein concentrations of worm lysates were quantified by the Bicinchoninic Acid (BCA) Protein Assay method. On the SDS-PAGE gel, we loaded 200 μg and 150 μg of total protein for the samples from the slo-1(cim105) and slo-1(cim113gf) animals, respectively. Worm lysates were separated on SDS-PAGE and transferred onto PVDF membranes. The separated proteins were probed with anti-GFP (Cell Signaling Technology, Danvers, MA, #2956, RRID:AB_10828931) or anti-tubulin (Developmental Studies Hybridoma Bank, AA4.3, RRID:AB_579793) antibodies. Pixel intensities of GFP and tubulin bands were quantified using Adobe Photoshop CC 2015 (RRID:SCR_014199).
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6

Antibodies Used in DNA Damage Study

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The following antibodies were used in this study: rabbit anti-53BP1 (Rappold et al. 2001 (link)), anti-γH2Ax (Millipore, clone JBW301), rabbit anti-γ-H2AX (Cell Signaling Technologies, 2577), anti-MDC1 (Millipore, clone P2B11), anti-BRCA1 (Santa Cruz Biotechnology, D-9), anti-ubiquitin (Enzo, FK2), anti-Flag (Sigma, M2), rabbit anti-Flag (Sigma, F7425), rabbit anti-EGFP (Abcam, ab6556), anti-tubulin (Developmental Studies Hybridoma Bank, 12G10), and anti-H2A (Millipore, 07–146). Polyclonal anti-USP51 antibody was generated by immunizing the USP51 peptide (144 PRAWRGSRRRSRPG 157) in rabbits and purifying antisera through the USP51 peptide-conjugated beads. Monoclonal anti-H2AK15ub antibody (clone EDL H2AK15-4, IgG2b, κ) was generated in the Mayo Clinic Antibody Hybridoma Core (Supplemental Material).
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7

Pluripotency Factors and Histone Modifications

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The following antibodies were used in this study: anti-H3K4me1 (generated in-house), anti-H3K4me2 (generated in-house), anti-H3K4me3 (generated in-house), anti-H3K27ac (Cell Signaling, 8173), anti-H3 (generated in-house), anti-Mll3 (generated in-house), anti-Mll4 NT (generated in-house), anti-Mll4 CT (generated in-house), anti-Rbbp5 (Bethyl Laboratories, A300-109A), anti-Oct4 (Santa Cruz Biotechnology, 5279), anti-Nanog (eBioscience, 14-5761-80), anti-Lsd1 (Abcam, 17721), and anti-tubulin (Developmental Studies Hybridoma Bank, E7).
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8

Western Blot Antibody Optimization

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For Western blot analysis, total protein quantitation was performed using the BCA Protein Assay (ThermoScientific, Waltham, MA, USA). The antibodies used were anti-KDM1/LSD1 antibody (Abcam ab17721-1:1000), anti-TUBULIN (Developmental Studies Hybridoma Bank (DSHB)-E7)-1:2000), anti-Actin (a.a. 50-70, clone C4 Millipore U.S.A. MAB1501- 1:10000), anti-rabbit IgG-HRP-linked (Cell Signaling 7074-1:2000), and anti-mouse IgG-HRP-linked (Cell Signaling 7076-1:2000).
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9

Quantification of PcG Protein Levels by Western Blot

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Western blotting was performed as described previously (Nakayama et al., 2012 (link)) on samples containing 60 wing or leg discs. Antibodies were used at the following dilutions: anti-E(z) (1:4000), anti-Pc (1:4000), anti-Pho (1:4000), anti-Pcm (gift of S. F. Newbury; 1:2000), anti-Spt16 (Dre4) (Nakayama et al., 2012; 1:4000 (link)), anti-Mbf1 (1:5000), anti-FLAG M2 (Sigma, F3165; 1:2000), anti-tubulin (Developmental Studies Hybridoma Bank, a gift of K. Saito, National Institute of Genetics, Japan; 1:5000), anti-rabbit and anti-mouse IgG-HRP (GE Healthcare, NA9340 and NA9310; 1:5000) and anti-mouse IgG-HRP.
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10

Quantifying ADAR2 Protein in Fly Heads

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Heads of male flies (minimum 20 flies) of the desired genotype were collected and aged for 2 days and then homogenized in NB Buffer (150 mM NaCl, 50 mM Tris-HCl pH 7.5, 2 mM EDTA, 0.1% NP-40). Protein concentration was determined with Pierce BCA Protein Assay Kit. An equal amount of protein was loaded in each lane of a Tris-Glycine SDS Gel and transferred to a nitrocellulose membrane. The membrane was blocked with 5% Milk, incubated with primary antibody overnight. The next day it the membrane was incubated with secondary antibody and developed with Clarity™ Western Blotting Substrate from Bio-Rad. Anti-ADAR2 (HPA018277) (1:250) anti-Tubulin (Developmental Studies Hybridoma Bank) (1:5000). Imaging was performed with ChemiDoc™ XRS + System and signal intensity was quantified with Image J software and Statistical analyses were done using the t-test.
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