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3 protocols using p ire1

1

Investigating ER Stress Pathways in PEDV Infection

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The ER stress inhibitor 4-phenylbutyrate (4-PBA) and a pancaspase inhibitor were obtained from MCE (Shanghai, China). All inhibitors were solubilized in dimethyl sulfoxide (DMSO; Solarbio, Beijing, China). Inhibitors were diluted, added to culture medium, and cultivated for an hour before infection. Antibodies against Bax, Bcl-2, caspase-3, caspase-9 and CHOP were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibodies against GRP78, PERK, p-PERK, eIF2, p-eIF2, IRE1, p-IRE1, JNK, p-JNK and β-actin were purchased from ABclonal (Wuhan, China). An antibody against IRX1 was purchased from ABmart (Shanghai, China), and antibodies against Flag-tagged, GFP-tagged and PE-conjugated anti-mouse IgG were purchased from TRAN (Beijing, China). A polyclonal antibody directed against the PEDV (CH/SXYL/2016) N protein and PEDV Nsp9 protein was prepared in our laboratory.
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2

Western Blot Analysis of Skeletal Muscle and Treated Cells

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Western blotting was performed as previously described [34 (link)]. In brief, skeletal muscle and treated cells were lysed in ice-cold RIPA buffer with PMSF protease inhibitor (Beyotime). The supernatant was obtained by centrifugation, and the concentration of protein was determined by a BCA assay kit (Beyotime). Equal amounts of proteins from different groups were loaded and separated on 6–15% SDS–PAGE gels, transferred onto nitrocellulose membranes (Pall Corporation) and blocked for 2 h at 37 °C with 5% milk-TBST. Membranes were incubated either overnight at 4 °C with primary antibodies against: SelK (Abcam, 1: 500), MyoD (Abclonal, 1:1000), MyoG (Abclonal, 1:1000), MyHC (Abclonal, 1:1000), GRP78 (Abclonal, 1:1000), ATF6 (Abclonal, 1:1000), phospho-IRE1 (p-IRE1, Abclonal, 1:500), phospho-PERK (p-PERK, Abclonal, 1:500), phospho-eIF-2α (p-eIF-2α, Abclonal, 1:1000), CHOP (Abclonal, 1:1000), LC3B (Abclonal, 1:1000), p62 (Abclonal, 1:1000), cleaved Caspase3 (cle-Cas3, Abclonal, 1:1000), Bcl2, Bax (My lab, 1:400) and GAPDH (Servicebio, 1:1000). Then, the membranes were washed with TBST three times and incubated with HRP-conjugated secondary antibodies (ImnunoWay, 1: 8000) at temperature for 1 h. The bands were visualized by using an ECL kit (Kangweishiji Biotechnology) and an Azure imaging Biosystem C300.
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3

Cellular Protein Expression Analysis

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Tissues and cells were lysed, and protein concentrations were determined. Antibodies: HRD1, c-caspase12, Flag, Myc, HA, PI3k, Akt and p-Akt (Proteintech); β-actin (Bimake); p-PI3k (Bioworld); TMEM2 (AVIVA); p-PERK, PERK, c-PARP, c-caspase3, ATF6, CHOP, p-IRE1, and IRE1 (ABclonal); and ubiquitin (Cell Signaling Technology). Gel-Pro Analyzer version 4.0 (Media Cybernetics, MD, USA) was used for protein quantification.
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