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Fcs software

Manufactured by De Novo Software
Sourced in United States

FCS software is a data analysis tool designed for the flow cytometry community. It provides a platform for the acquisition, processing, and analysis of flow cytometry data. The software enables users to visualize and interpret the data generated by flow cytometers.

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16 protocols using fcs software

1

OVCAR-3 Cell Cycle Analysis

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OVCAR-3 SP cells were treated with BLPs at different concentrations for 24 h and were then harvested by centrifugation (1500 rpm for 15 min). The cell pellets were suspended with 70% ethanol at −20 °C overnight. Afterwards, cells were washed with PBS twice and incubated with RNase (180 μg mL−1) for 30 min at 37 °C, followed by incubation with PI solution (final concentration: 50 μg mL−1) for 30 min in the dark. Cells were analyzed by using a flow cytometry system (BD Biosciences) and results were analyzed using FCS software (De Novo Software, CA, USA).
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2

Myricetin-Induced Cell Cycle Analysis

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Cells treated with various concentrations of myricetin for 24 h were digested by trypsin, collected by 1,000 rpm centrifugation for 10 min, and then washed with cold PBS. The cell pellets were suspended with 70% ethanol, stored at −20°C. After centrifugation at 1,000 rpm for 6 min, the cell pellets were re-suspended in PBS, collected by centrifugation, and incubated with 180 μg/ml RNase A at 37°C for 15 min. Flow cytometry (FACSCalibur system, BD Biosciences) was used for detection after 50 μg/ml propidium iodide (final concentration) was added to cell pellets for 15-min staining. Data were plotted and analyzed by using FCS software (De Novo Software, Los Angeles, CA, USA).
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3

Cell Cycle Analysis by Flow Cytometry

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After treating with BTFS (0, 1.5, 2.0, 2.5 μg/mL) for 24 h, the cells were washed with cold PBS twice and then fixed with ice-cold 70% ethanol at 4 °C overnight. Afterwards, the cells were washed twice with PBS and incubated with 180 μg/mL RNase (Invitrogen) for 15 min at 37 °C, then incubating with 50 μg/mL propidium iodide (PI) solution (Sigma) for 15 min in the dark at 37 °C. The cells were then analyzed by FACSCalibur flow cytometry (BD Biosciences, San Jose, CA, USA) and data were analyzed by FCS software (De Novo Software, CA, USA).
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4

Galangin Induces Cell Cycle Arrest in A2780/CP70 and OVCAR-3 Cells

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A2780/CP70 and OVCAR-3 cells (1 × 106/dish) were treated with galangin at different concentrations (10–40 μM) for 24 h, digested by trypsin and collected through centrifugation. Subsequently, cells were washed with cold PBS, suspended in 70% ethanol and stored at −20 °C. After being collected through centrifugation for 6 min at 1000 rpm, the cell pellets were washed with PBS again, and the PBS was removed. Then, they were incubated with 180 μg/mL RNase A at 37 °C for 15 min. Next, 50 μg/mL propidium (final concentration) was added for 15 min staining and then detection by flow cytometry (FACSCalibur system, BD Biosciences, Franklin Lakes, NJ, USA). Data were plotted and analyzed with FCS Software (De Novo Software, Los Angeles, CA, USA).
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5

Quantifying Aldehyde Dehydrogenase Activity

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ALDH activity was determined using the Aldefluor assay kit (STEMCELL Technologies, Vancouver, BC, Canada) as described by the manufacturer. Dissociated single cells were suspended in the Aldefluor assay buffer containing the ALDH substrate, bodipy-aminoacetaldehyde (BAAA) and incubated for 45 min at 37 °C with 5% CO2 (test tube). An identical reaction was also performed with 15 mM diethylamino-benzaldehyde (DEAB), an ALDH-specific inhibitor (control tube). Cells were analyzed by using a flow cytometry system (BD Biosciences) and the results were analyzed using FCS software (De Novo Software, CA, USA). The ALDH activity of samples was measured based on the fluorescence intensity beyond the threshold defined by the reaction with DEAB.
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6

Cell Cycle Analysis with GA Treatment

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The test method of Cell cycle evaluation was according to our previous procedure [17 (link)]. In brief, after exposure with GA (control, 5, 10, 20 μM) for 48 h, the cells were trypsin-digested, centrifuged at 3000× g rpm for 10 min, PBS-washed, suspended in 70% ethanol, and stored at −20 °C. For cell cycle evaluation, the stored cell suspension was centrifuged at 1000× g rpm for 6 min before re-suspension in PBS, and centrifuged again to collect pellet, and finally exposed to 180 μg/mL RNase A at 37 °C for 15 min and 50 μg/mL propidium iodide stain for 15-min before flow cytometry (FACSCalibur system, BD Biosciences) evaluation. Data analysis was done with FCS software (De Novo Software, Los Angeles, CA, USA).
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7

Cell Cycle Analysis of BLP Treatment

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Cell were seeded at the density of 8 × 105 per well in the medium with 10% FBS at 37 °C with 5% CO2 in the 60-mm plates and were attached to the bottom overnight. Afterwards, cells were starved for 24 h and treated with BLPs at different concentrations for another 24 h. Then, cells were digested by trypsin and collected by centrifugation and washed with cold PBS. The cell pellets were suspended in 70% ethanol at −20 °C overnight. Afterwards, cells were washed with PBS and incubated with 180 μg/mL RNase A at 37 °C for 20 min and stained with 50 μg/mL propidium iodide (final concentration) for 15 min. Flow cytometry (FACSCaliber system, BD Biosciences) was used for detection. Data were analyzed by using FCS Software (De Novo Software, Los Angeles, CA).
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8

Cell Cycle Analysis by Flow Cytometry

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Cells treated with ChK for 24 h were digested by trypsin and collected by 3000 rpm centrifugation for 5 min and washed with ice-cold PBS. The cell pellet was suspended with 70% ethanol at −20 °C overnight, washed with PBS, then incubated with 180 μg/mL RNase A at 37 °C for 15 min. For flow cytometry, 50 μg/mL propidium iodide (final concentration) was added for 15 min staining in the dark at 37 °C. Flow cytometry (FACSCaliber system, BD Biosciences) was used for detection. Data were plotted and analyzed by using FCS Software (De Novo Software, Los Angeles, CA).
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9

Annexin V-FITC Apoptosis Assay

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According to the method described in the manufacturer’s instructions of Alexa Fluor 488 Annexin V/Dead Cell Apoptosis kit. In brief, both OVCAR-3 and A2780/CP70 cells (106/dish) treated with TS or RPMI-1640 (FBS free) for 24 h were washed with cold PBS twice and digested by trypsin. Cells were collected by 1000 rpm centrifugation for 8 min at 4 °C. Then the cell pellets were re-suspended in 1 mL 1× Annexin V binding buffer. An aliquot of 100 µL of the cell solution (around 2.0 × 105 cells) was transferred to a 1.5 mL tissue culture tube. Subsequently, 5 µL of Annexin V-FITC was added into tubes and gently vortexed and incubated in the dark at room temperature for 15 min. Then 10 µL PI (1 mg/mL in PBS) was added to each tube and stained for 10 min when kept on ice. Following this, 290 µL of binding buffer was added to each tube and gently vortexed before detection. The samples were analyzed by flow cytometry (FACSCalibur system, BD Biosciences, San Jose, CA, USA). Data was plotted and analyzed using FCS software (De Novo Software, Los Angeles, CA, USA).
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10

Cell Cycle Analysis with GA Treatment

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The test method of Cell cycle evaluation was according to our previous procedure [17 (link)]. In brief, after exposure with GA (control, 5, 10, 20 μM) for 48 h, the cells were trypsin-digested, centrifuged at 3000× g rpm for 10 min, PBS-washed, suspended in 70% ethanol, and stored at −20 °C. For cell cycle evaluation, the stored cell suspension was centrifuged at 1000× g rpm for 6 min before re-suspension in PBS, and centrifuged again to collect pellet, and finally exposed to 180 μg/mL RNase A at 37 °C for 15 min and 50 μg/mL propidium iodide stain for 15-min before flow cytometry (FACSCalibur system, BD Biosciences) evaluation. Data analysis was done with FCS software (De Novo Software, Los Angeles, CA, USA).
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