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6 protocols using goat anti mouse igg secondary antibody

1

Western Blot Analysis of NLRP3 Inflammasome

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Cell and tissue proteins were extracted as previously described (19 (link)), and bicinchoninic acid method was used to determine the protein concentration. Nitrocellulose membranes were incubated with primary antibodies (anti-NLRP3, anti-IL-18, GAPDH, Proteintech Group, Inc., Chicago, IL,USA; anti-GSDMD, Abbexa Ltd, Cambridge, United Kingdom; anti-caspase-1, anti-IL-1β, anti-cleaved caspase-1, anti-cleaved IL-1β, Affinity Biosciences, Cincinnati, OH, USA; anti-caspase-11 p20, Santa Cruz Biotechnology, Inc.Dallas, Texas, USA) at 4 °C overnight. The membranes were washed with 1% TBST before and after incubation with goat anti-rabbit IgG secondary antibody (LI-COR Biotechnology, Lincoln, NE, USA) or goat anti-mouse IgG secondary antibody (LI-COR Biotechnology, Lincoln, NE, USA) for 1 h at room temperature. Odyssey CLx imaging system (LI-COR Biosciences, Lincoln, NE, USA) was used to analysis protein expression as previously described (19 (link)).
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2

Antibody Characterization Protocol

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The following antibodies were used in this study: anti-centromere antibody (ACA; or CREST-ImmunoVision; HCT-0100), anti-Myc (Roche; 11667203001), anti-Smc1 (Bethyl; A300-055A), anti-Rpb1 (Abcam; ab5408), anti-H3K4me2 (EMD Millipore; 07–030), anti-H3K9me3 (Abcam; ab8898), anti-Actin (Invitrogen; MA5-11869), anti-CENP-B (Abcam; ab25734), anti–CENP-A (EMD Millipore; 07–574), and anti–Rpb2-pSer2 (BioLegend; H5). Anti-Sgo1, anti-Bub1, and anti-Wapl were made in-house as described previously (Liu et al., 2013a (link); Qu et al., 2019 (link)). Anti-Sororin antibodies described previously were a gift from Dr. Susannah Rankin at Oklahoma Medical Research Foundation, Oklahoma City, OK (Liu et al., 2013b (link)).
The secondary antibodies were purchased from LI-COR: Goat anti-Mouse IgG Secondary Antibody (926–68070) and Goat anti-Rabbit IgG Secondary Antibody (926–32211).
For immunoblotting, primary and secondary antibodies were used at 1-µg ml−1 concentration.
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3

Quantifying Protein Degradation Dynamics

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Protein degradation was assessed as previously described [31 (link)], with minor differences. Briefly, strains were grown in liquid YPAD overnight at 30 °C with shaking, then diluted to a starting OD595 of 0.75 and grown for 1hr prior to adding CHX (50 µg/mL final concentration; VWR International, LLC., Radnor, PA, USA, product #97064-724). After the treatment period, optical density was used to approximate cell concentrations and normalize the total amount of cells harvested within each strain to the least-dense culture. Cells were harvested and lysed as described in [8 (link),31 (link)]. 17 µL of lysate were loaded onto a polyacrylamide gel, transferred to a PVDF membrane, and blotted with the appropriate primary antibody. LCD-Sup35 fusions were probed with an anti-Sup35C monoclonal antibody (E4 [68 (link)], a gift from Susan Liebman), LCD-GFP fusions were probed with an anti-GFP monoclonal antibody (Santa Cruz Biotechnology, Inc., Dallax, TX, USA, product #sc-9996), and native G-rich and Q/N-rich proteins possessing a 2×HA tag were probed with an anti-HA monoclonal antibody (BioLegend, San Diego, CA, USA, product #901502). For all blots, a fluorophore-conjugated, polyclonal goat anti-mouse IgG secondary antibody was used (LI-COR, Lincoln, NE, USA, product #926-32210).
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4

Binding Specificity of Anti-SARS-CoV-2 Monoclonal Antibodies

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A binding Western blot analysis
was carried out to evaluate anti-SARS-CoV-2 mAb-binding specificity.
Briefly, 2.5 μg of SARS-CoV-2 RBD (Sino Biological, USA) protein
was run in 12% NuPAGE Novex polyacrylamide gels (Invitrogen Life Science
Technologies, USA) and transferred to PVDF membranes (Invitrogen Life
Science Technologies, USA). The membranes were blocked using Odyssey
blocking buffer (LiCor BioSciences, USA) and then incubated with the
supernatants from the mAb clones for overnight at 4 °C. After
incubation, the membranes were washed with PBS containing 0.05% Tween
20 or PBST. Subsequently, the membranes were stained with IRDye800
goat anti-mouse secondary antibody (LI-COR Biosciences, USA) at room
temperature and then again washed with PBST. Finally, the membranes
were scanned using a LI-COR Odyssey CLx imager. Furthermore, for determining
the heavy and light chain expressions of the mAb clones, this assay
was carried out, in which 6 ng of each mAb clone was run in 12% NuPAGE
Novex polyacrylamide gels (Invitrogen Life Science Technologies, USA)
and subsequently probed with goat anti-mouse IgG secondary antibody
(LiCor BioSciences, USA).
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5

Antibody Detection of TcpA Protein

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Rabbit anti-TcpA against classical TcpA was a generous gift from Dr. W. F. Wade, Dartmouth University, Hanover, NH, USA [30 (link)]. Goat anti-rabbit IgG and goat anti-mouse IgG secondary antibodies were purchased from LI-Cor Biosciences (USA).
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6

Assessing SYC-522 Effects on Histone Methylation

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For assessment of the effect of SYC-522 on histone methylation in MLL-rearranged leukemia cell lines, 1×106 cells were incubated with SYC-522 for 3–6 days. The doses for treating the cells were determined by IC50s reported previously [19] (link). MV4-11 cells were treated with 3 µM SYC-522, and MOLM13 were treated with 10 µM. Cells were harvested at the appropriate time point and histones were extracted as described [18] (link). The concentrations of extracted histones were measured by Bradford protein assay. The dimethylation of H3K79 (Abcam 3594), trimethylation of H3K4 (Cell Signaling Technology 9751), trimethylation of H3K27 (Cell Signaling Technology 9733) and total H3 (Cell Signaling Technology 3638) were probed by appropriate primary antibodies (1∶1000 dilution), followed by IR700 or IR800 goat anti-rabbit IgG or goat anti-mouse IgG secondary antibodies (LI-COR). Bands were visualized and quantified on the Odyssey Infrared Imager. Densitometry values for methylated H3K4, H3K27 and H3K79 were normalized to the corresponding total H3 value, and shown as the percentage of the value for untreated cells.
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