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Pierce crosslink ip kit

Manufactured by Thermo Fisher Scientific
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The Pierce Crosslink IP Kit is a product designed for the immunoprecipitation (IP) of proteins and protein complexes. The kit provides reagents and protocols for efficient crosslinking of target proteins to antibodies, enabling the isolation and analysis of protein-protein interactions.

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48 protocols using pierce crosslink ip kit

1

CoIP of BMPR2 and β-arrestin in HEK293s

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For CoIP in HEK293s, cells were grown in six‐well plates to 50% confluency and cotransfected with Myc‐BMPR2 or Myc‐BMPR2‐S532X and HA‐β‐arrestin1/2 using Lipofectamine 2000 (Invitrogen). After 48 h of transfection, cells were scraped and lysed in lysis buffer of Pierce Crosslink IP Kit (Thermo/Pierce) with complete protease inhibitor cocktail tablet (Roche Applied Sciences). Cell lysates were incubated overnight at 4°C with anti‐Myc‐sepharose made with anti‐Myc antibody (Cell Signaling) and Pierce Crosslink IP Kit (Thermo/Pierce). Sepharose beads were then eluted with 0.5 mg/ml c‐Myc peptide (Genscript) in TBS. The elution samples were then detected by immunoblotting.
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2

Co-Immunoprecipitation of BMPR2 and β-arrestin

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For CoIP in HEK293s, cells were grown in 6-well plates to 50% confluency and co-transfected with Myc-BMPR2 or Myc-BMPR2-S532X and HA-β-arrestin1/2 using Lipofectamine 2000 (Invitrogen). After 48 h of transfection, cells were scraped and lysed in lysis buffer of Pierce Crosslink IP Kit (Thermo/Pierce) with complete protease inhibitor cocktail tablet (Roche Applied Sciences). Cell lysates were incubated overnight at 4°C with anti-Myc-sepharose made with anti-Myc antibody (Cell signaling) and Pierce Crosslink IP Kit (Thermo/Pierce). Sepharose beads were then eluted with 0.5 mg/ml c-Myc peptide (Genscript) in TBS. The elution samples were then detected by immunoblotting.
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3

BCL-XL Antibody Crosslinking and Co-IP

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The PierceTM Crosslink IP kit (Thermo Fisher Scientific) was used to crosslink the BCL-XL antibody to 20 µL Protein A/G affinity beads. Beads were washed with 1X coupling buffer before incubation with end-over-end mixing at room temperature for 1 h with 3 µg BCL-XL antibody or rabbit IgG (#2729 s, Cell Signaling) dissolved in 1X coupling buffer. Bound antibodies were cross-linked to the Protein A/G beads using disuccinimidyl suberate by end-over-end mixing for 1 h at room temperature. Columns were centrifuged and washed with elution buffer and IP lysis/wash buffer, and stored at 4 °C. For co-immunoprecipitation, cells were treated as indicated in figure legends and lysed in RIPA lysis buffer. 500 µg of cell lysate was pre-cleared using control agarose beads for 1 h with end-over-end mixing, and the pre-cleared lysate was then incubated with the cross-linked antibody overnight at 4 °C. Bound protein complexes were eluted from the columns using elution buffer and precipitates were combined with 6X Laemlli buffer, boiled for 5 min at 95 °C and analysed via western blotting. Membranes were probed for BCL-XL, BIM, BAX, BAK and PUMA, with GAPDH as a loading control.
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4

Co-immunoprecipitation of Hsc70 and AIF

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For the co-immunoprecipitation assay, cervical cancer cells were treated with SHetA2 or vehicle for 24 hours and protein isolates were collected with M-PER. Approximately 500 μg of protein lysate was incubated with agarose beads (already coupled with 10 µg of hsc70 or AIF antibodies per manufacturer protocol of PierceTM Crosslink IP kit, ThermoFisher Scientific # 26147) overnight at 4°C. Then beads were washed with buffer provided in the kit and the immuno-precipitated complexes were collected, re-suspended in sample buffer and heated for 5 min at 95°C. The co-immunoprecipitation of client proteins was detected by Western blot analysis using equal volumes of immuno-precipitated proteins.
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5

MRPL12 Protein Immunoprecipitation

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Immunoprecipitation for MRPL12 was performed with PierceTM Crosslink IP Kit (Thermo Scientific, 26147) according to the manufacturer’s instructions. In brief, 3 μg of MRPL12 antibody or rabbit control IgG was coupled to 20 μl of Protein A/G Agarose. After treated with proteasome inhibitor MG132 (Sigma, M7449-200UL) for 6 h, cells were lysed with IP Lysis Buffer. Cell lysates were centrifugated at 12,000 rpm for 15 min to remove debris and were used as input. Protein concentrations of lysates were assessed by BCA Protein Assay Kit. Then, 1 mg of cell lysates was incubated with antibody coupling Protein A/G Agarose overnight. The agaroses were washed, and the antigens were eluted with elution buffer. Finally, the samples were analyzed by using Western blot as described above.
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6

Immunoprecipitation and Mass Spectrometry Analysis of Entamoeba histolytica Proteins

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Immunoprecipitation of trophozoite lysates were performed with both immune and pre-immune control antibodies cross-linked with protein G/S sepharose beads [58 (link), 59 (link)] as prescribed by the Pierce Crosslink IP-kit (Thermo Scientific). Briefly, the cells were lysed in lysis buffer (0.025M Tris, 0.15M NaCl, 0.001 M EDTA, 1% NP-40, 5% Glycerol, Protease Inhibitor cocktail (PIC, Roche), pH 7.4) and the lysates were precleared using the control Protein G Sepharose beads. The precleared lysates were incubated with respective antibodies (EhP3, EhCoactosin, Pre Immune) cross-linked with protein G/S sepharose beads for 18 hr at 4°C. The coimmunoprecipitated samples were collected and then subjected to trypsin digestion and further analyzed by LC-MS or, boiled in 4X SDS laemmli buffer and analysed by western blotting. LC-MS detected proteins were identified by blasting the peptides over an E. histolytica database (Uniprot), using Proteome Discoverer (Thermo Scientific). Unique interacting partners were identified by comparing the proteins immunoprecipitated by the immune antibodies with those immunoprecipitated by the pre-immune control antibodies.
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7

Exploring GLCCI1-WDR45B Interaction in AECs

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Co‐immunoprecipitation was carried out to detect the relationship between GLCCI1 and WDR45B in AECs. Human and mouse AECs were lysed according to the previous study.18 Then, 2 mg of cell lysates were incubated with protein G beads (Pierce Crosslink IP Kit, Thermo Fisher Scientific) at 4°C for 30 minutes, and protein G beads pre‐bound with antibodies of GLCCI1 and WDR45B (Abcam) at 4°C overnight. Subsequently, the protein complex was washed from beads using glycine, and the expression of WDR45B and GLCCI1 was measured by Western blot.
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8

Detecting Plk4 Protein Interactions

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Immunoprecipitation was performed essentially as described previously 32 (link) in TBSN buffer [20 mM Tris–HCl (pH 8.0), 150 mM NaCl, 0.5% Nonidet P-40, 5 mM EGTA, 1.5 mM EDTA, 20 mM p-nitrophenylphosphate and protease inhibitor cocktail (Roche)]. Immunoblotting was performed following standard procedures, and immobilized proteins were detected by enhanced chemiluminescence (ECL) substrate (Pierce). Original images of immunoblots used in this study can be found in Supplementary Figure 8.
To detectPlk4 coimmunoprecipitated with Cep192 or Cep152 at endogenous levels, anti-Cep192 or anti-Cep152 antibodies were first cross-linked to protein A/G agarose beads using Pierce Crosslink IP Kit (Thermo Scientific), and then used for immunoprecipitation analysis with HeLa lysates prepared in the TBSN buffer.
For lambda phosphatase (λ-PPase)-treated experiments, cell lysates were prepared in a phosphatase lysis buffer [50 mM Tris–HCl (pH 7.5), 150 mM NaCl, 0.5% Nonidet P-40, 1 mM EDTA, 1 mM MgCl2, 2 mM MnCl2], incubated with 2000 units of λ-Phosphatase (New England Biolabs) for 1 h at 30°C, and then subjected to coimmunoprecipitation analysis with the indicated antibodies.
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9

Immunoprecipitation of Claudin-4 Complexes

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Claudin-4 (and interacting proteins) was pulled from cell lysates with an antibody directed to claudin-4 (mouse anti-human claudin-4, Invitrogen) bound to Protein A/G Dynabeads® Magnetic beads, using the Pierce™ Crosslink IP Kit (ThermoFisher). Beads were incubated with lysate (~500 μg protein) for 1 hour at room temperature and then collected using a Magnetic Separation Rack (New England BioLabs, Ipswich, MA, USA). Proteins were eluted from beads per manufacturer’s protocol. Eluted proteins were run on 10% SDS-PAGE and Western blot analysis was performed as described above, using antibodies directed to claudin-4 (rabbit anti-human claudin-4; 1:500) and tubulin (rabbit anti-human α-tubulin or β-tubulin; 1:1000).
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10

Co-Immunoprecipitation of GSDMD and LC3B

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Thermo Pierce Crosslink IP Kit (Thermo Scientific, 26149) was used for CO‐IP experiment. GSDMD and its cleaved fragment GSDMD‐N, together with LC3B, were captured from cell lysate using GSDMD antibody (ab209845) or LC3B antibody (Abcam, EPR18709). Mouse IgG antibodies for IP (Biotin) (ab131367) and rabbit IgG antibodies for IP (Cell Signalling Technology, 3678S) were used as control for excluding non‐specific binding reaction. HL‐1 cells with or without LPS plus Nigericin treatment were harvested, homogenized and further re‐suspended in lysis buffer. After incubating on ice and high‐speed centrifuging, the supernatant was quantified by BCA protein assay kit (P0012). The cell lysate was immediately precleared by Protein A/G PLUS‐Agarose (Santa Cruz Biotechnology, sc‐2003) at 4°C for 1 h. The precleared lysate was then co‐immunoprecipitated overnight at 4 °C with anti‐GSDMD or anti‐LC3B antibody covalently coupled to Protein A/G PLUS‐Agarose. For the control experiment, the same amount of lysate was incubated with mouse IgG or rabbit IgG covalently coupled with Agarose. After the last centrifuge step, protein complexes were washed out from the beads at 95 °C for 5 min.
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