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9 protocols using uas egfp

1

Genetic Fly Lines for Developmental Analysis

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Flies were raised on standard media. Crosses were raised at 25°C unless otherwise noted. 10xstat92E-GFP (BL#26197) [22 (link)], UAS-eGFP (BL#5430), UAS-eGFP (BL#5431), hsflp122;;Ubi-RFP,FRT79 (made from BL#34498), y1v1hopTum/FM7c (BL#8492; referred to as hopTum-l), act5c-GAL4/CyO (BL#4414), UAS-MYR-RFP/CyO (BL#7118), hml-GAL4 (BL#30139) and stat06346 (BL# 11681) were obtained from Bloomington Drosophila Stock Center, Bloomington, IN. UAS-hipkRNAi (VDRC ID#108254, [23 (link)]) was obtained from Vienna Drosophila Resource Center, Vienna, Austria. Also used were dpp-GAL4/TM6B [24 (link)], os,y (a gift from Norbert Perrimon), UAS-Stat92E-GFP/Cyo and UAS-Stat92E-MYC/Cyo,wg-lacZ (a gift from James Castelli-Gair Hombria, [25 (link),26 (link)], PD-lacZ (a gift from Henry Sun; referred to as upd1-lacZ hereon after, Tsai and Sun, 2004 [27 (link)]), ywhsflp,tub-GAL4,UAS-GFP,6X MYC-NLS; UAS-y+;tub-GAL80,FRT2A/TM6B (a gift from Gary Struhl), ywhsflp122;sp/Cyo;TM2/TM6B, UAS-HA-hipk1M, UAS-HA-hipk3M, hipk4,FRT79/TM6B [28 (link)], UAS-HA-hipkWT-attP40, UAS-MYR-HA-hipk-attP40, UAS-NLS-HA-hipk-attP40 (made in this study). act5c-GAL4/CyO and UAS-MYR-RFP/CyO were recombined to generate act5c-GAL4, UAS-MYR-RFP/CyO. hipk4, FRT79/TM6B and 10xstat92E-GFP/TM6B were recombined to generate hipk4, FRT79,10xstat92E-GFP/TM6B.
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2

Drosophila Genetic Toolkit Protocols

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The following strains were obtained from the Bloomington Drosophila Stock Center: w1118, FRT82B, FRTG13, enGal4,UAS-EGFP (Bl25752), Df(3R) tll-e/TM6B (Bl5415), UAS-RasV12, UAS-Sox100BRNAi(TRiP) (Bl57417 and Bl35656), UAS-Sox21aRNAi(TriP) (Bl31902 and Bl53991), UAS-Stat92ERNAi(TRiP) (Bl35600 and Bl31318), UAS-zfh2 (Bl56545), and Sox21aJC2 null mutant (Bl68154). UAS-FosRNAi (VDRC10813) were obtained from the Vienna Drosophila RNAi Center. The line esgGal4NP5130 was provided by S. Hayashi, esgGal4ts,Su(H)GBEGal80 was provided by H. Jasper, DeltaGal4 and Su(H)GBEGal4 by S. Hou, Su(H)GBELacZ by S. Brand, and UAS-Hep by M. Mlodzik.
All flies were raised on standard yeast and molasses-based food, at 25°C and 65% humidity, on a 12 h light/dark cycle, unless otherwise indicated.
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3

Genetic Tools for Drosophila Experiments

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Unless otherwise stated, all experiments were performed using 48 hr post-eclosion, wild type y1, w1118, a yellow body and white-eyed strain. The heterozygous mutant strain for NOS, NOS24283 and y w; repo-GAL4 and UAS-eGFP transgenic lines were obtained from Bloomington Stock Center. All fly stocks were reared on Ward's Instant Drosophila medium (blue) and all experiments were performed at room temperature. The transgenic lines for hemese, hemocyte-specific transmembrane protein, y w; He-Gal-4; UAS-eGFP (chromosome III), y w, btl-Gal4; UAS-btl::GFP which expresses a Btl::GFP fusion protein in btl-expressing tissues, including trachea were gifts from Dr. Janis O'Donnell (University of Alabama) and have been described previously62 63 (link).
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4

Characterizing Crumbs Mutants in Drosophila

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Flies were kept at 25°C. The following stocks/mutant alleles were used: OregonR as wild-type control, crb11A22[30] , crbGX24[31] (link), crb8F105[30] , [32] (link)
foscrbY10A,ΔERLI; crbGX24[33] (link), UAS-crb30.12e[14] (link) called UAS-crbfull here, en-Gal4 [34] (link). Mutant stocks were balanced over TM3, Twist-Gal4, UAS-EGFP (Bloomington Stock Center).
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5

Drosophila Handling and Reagent Preparation

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Fly stocks were raised at 18 °C, and all the experiments were performed at 25 °C (12 h daytime and 12 h nighttime, 60% humidity) on standard cornmeal food. If necessary, the food was supplemented with other chemicals. Fly stocks Actin-GAL4/CyO (Bloomington #4414), Da-GAL4 (Bloomington #8641), and UAS-EGFP (Bloomington#5130) were obtained from the Bloomington Stock Center (Bloomington, IN, USA); NP3084-GAL4 (DGRC# 113094) was from the Drosophila Genetic Resource Center at the Kyoto Institute of Technology (Kyoto, Japan). Esg-GAL4, pros-GAL4, and myo1A-GAL4 are a gift from Wei Zhang lab (Tsinghua University, China). The RNAi lines used for the screen were attached in the supplement Additional file 1: Table S1.
Hemin was dissolved in DMSO at 100 mM. 4,6-Dioxoheptanoic acid (succinylacetone, SA) was dissolved in H2O at 50 mg/ml, and the zinc-mesoporphyrin (Logan, UT) was prepared in DMSO at 100 mM.
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6

Drosophila Genetic Modeling of ALS

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All Drosophila stocks were maintained on standard cornmeal at 25 °C in light/dark-controlled incubators. The w1118, UAS-eGFP, and D42-GAL4 were obtained from the Bloomington stock center. The UAS-FUS WT, UAS-FUS P525L, and UAS-FUS R521C flies as well as the experimental conditions for climbing index assessment were previously described [1 (link)].
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7

Drosophila Genetics Resources for Research

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w1118, P{EP}Nup44AEP2417, P{EPg}Nup93-2HP35056, P{UAS-NLS-NES-GFP}, P{UAS-NLS-ΔNES-GFP}, Ok371-gal4, and UAS-eGFP were obtained from the Bloomington Drosophila stock center (http://www.flystocks.bio.indiana.edu). UAS-Nup214 (F001467) and UAS-Nup43 (F003133) were obtained from FlyORF. Nup62 RNAi (100588) and Nup214 RNAi (41964) were obtained from Vienna Drosophila Resource Center. The previously described CRISPR/Cas9 human TDP-43 wild-type (hTDP-43WT) was a kind gift from David B. Morton (Oregon Health and Science University) (Chang and Morton, 2017 (link)). UAS-Nup62 overexpression lines (UAS-Nup62 OE) were generated through site-specific integration of the transgene at BestGene Inc To generate UAS-Nup62 OE lines, we used the pUAST-attB vector. We subcloned the Nup62 cDNA (Drosophila Genomic Research Center) into the pUAST-attB vector.
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8

Genetic Interactions in Drosophila Neurodegenerative Model

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The following mutant and transgenic flies were used in this study: GMR-Gal4 (Bloomington Stock Center), UAS-EGFP (Bloomington Stock Center), UAS-AR14Q (current study), UAS-AR61Q (current study), UAS-trAR112Q (Chan et al., 2002 (link)), UAS-NLK-WT (Ju et al., 2013 (link)), UAS-NLK-KN (Ju et al., 2013 (link)), nmoadk1 (Verheyen et al., 2001 (link)), nmoadk2 (Verheyen et al., 2001 (link)). In order to generate UAS-AR14Q and UAS-AR61Q transgenic fly lines, full-length human AR cDNAs with 14Q or 61Q were subcloned into the pUAST vector and then injected into fly embryos (via Best Gene, Inc. Chino Hills, CA). After crossing with the GMR-Gal4 driver line, two independent UAS-AR lines of each Q length that showed roughly equal levels of transgene expression were used for the analysis. For the genetic interaction analyses, appropriate fly lines were intercrossed and their progeny were raised at 22°C, 25°C, or 30°C on fly food containing or lacking 100 nM DHT. All experiments were carried out multiple times.
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9

Genetic Manipulation of Drosophila Stocks

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Fly stocks were raised at 18 °C, and all the experiments were performed at 25 °C on standard cornmeal food. When necessary, the food was supplemented with metals or metal chelators at stated concentrations. Fly stocks act-GAL4/CyO (Bloomington #4414), da-GAL4 (Bloomington #8641) and UAS-EGFP (Bloomington#5130) were obtained from the Bloomington Stock Center (Bloomington, IN, USA); NP3084 (DGRC# 113094) and NP1093 (DGRC# 103880) lines were obtained from the Drosophila Genetic Resource Center at the Kyoto Institute of Technology (Kyoto, Japan). The MtnB-EYFP line was a kind gift from Dr. Walter Schaffner (University of Zurich, Zurich, Switzerland). The RNAi lines were provided by the VDRC (Vienna, Austria) or custom made at the Tsinghua Fly Center (Beijing, China), Zip71B-RNAi (VDRC#44539 and TH00155.N), ZnT35C-RNAi (VDRC#103263 and TH00119.N), ZnT41F-RNAi (VDRC#5390), and Xdh-RNAi (THU5626). Transgenic flies were generated in w1118 background by P-element-mediated transformation.
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