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Softmax pro v 7

Manufactured by Molecular Devices
Sourced in United States

SoftMax Pro v.7.0.2 is a data acquisition and analysis software for Molecular Devices' microplate readers. It provides tools to acquire, analyze, and report data from various assays performed on the microplate readers.

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18 protocols using softmax pro v 7

1

SARS-CoV-2 Pseudovirus Neutralization Assay

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All viruses were first titrated to normalize the viral input between assays. Heat-inactivated sera or antibodies were first serially diluted (fivefold) in medium in 96-well plates in triplicate, starting at 1:100 dilution for sera and 10 µg ml−1 for antibodies. Pseudoviruses were then added and the virus–sample mixture was incubated at 37 °C for 1 h. Vero-E6 cells were then added at a density of 3 × 104 cells per well and the plates were incubated at 37 °C for about 10 h. Luciferase activity was quantified using the Luciferase Assay System (Promega) according to the manufacturer’s instructions using SoftMax Pro v.7.0.2 (Molecular Devices). Neutralization curves and IC50 values were derived by fitting a non-linear five-parameter dose-response curve to the data in GraphPad Prism v.9.2.
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2

SARS-CoV-2 Pseudovirus Neutralization Assay

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Pseudoviruses were titrated on Vero-E6 cells before conducting the neutralization assays to normalize the viral input between assays. Heat-inactivated sera were serially diluted starting from 1:100 with a dilution factor of four and antibodies were 5-fold serially diluted starting from 10 μg/mL in 96 well plates in triplicate. Then, 50 μL of diluted pseudovirus was added and incubated with 50 μL serial dilutions of serum or antibody for 1 h at 37°C. During the co-culture, Vero-E6 cells were trypsinized, resuspended with fresh medium, and then added into virus-sample mixture at a density of 4 × 104 cells/well. The plates were incubated at 37°C for ∼12 h before luciferase activity was quantified using the Luciferase Assay System (Promega) using SoftMax Pro v.7.0.2 (Molecular Devices). Neutralization ID50 values for sera and IC50 values for antibodies were calculated by fitting a nonlinear five-parameter dose-response curve to the data in GraphPad Prism v.9.2.
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3

Virus Neutralization Assay Protocol

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All viruses were first titrated to normalize the viral input between assays. Heat-inactivated sera or antibodies were first serially diluted in 96 well-plates in triplicate, starting at 1:100 dilution for sera and 10 µg ml -1 for antibodies. Viruses were then added and the virus-sample mixture was incubated at 37 °C for 1 h. Vero-E6 cells (ATCC) were then added at a density of 3 × 10 4 cells per well and the plates were incubated at 37 °C for approximately 10 h. Luciferase activity was quantified using the Luciferase Assay System (Promega) according to the manufacturer's instructions using SoftMax Pro v.7.0.2 (Molecular Devices).
Neutralization curves and IC 50 values were derived by fitting a nonlinear five-parameter dose-response curve to the data in GraphPad Prism v.9.2.
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4

FcγR Binding Assay with Immune Complexes

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Recombinant human FcγR ectodomains (Sinobiological) (5 μg ml−1) were immobilized into high-binding 96-well microtitre plates (Nunc), and after overnight incubation at 4 °C, plates were blocked with PBS plus 2% (w/v) BSA and 0.05% (v/v) Tween20 for 2 h. IgG immune complexes were prepared by incubating for 1 h at 4 °C Fc variants of the anti-NP (4-hydroxy-3-nitrophenylacetyl) monoclonal antibody Ab 3B62 with NP-BSA (27 conjugation ratio, Biosearch Technologies) at a molar ratio of 1:10 (antigen:antibody). IgG immune complexes or monomeric IgG (for FcγRI) were serially diluted (1:3 consecutive dilutions in PBS starting at 10 μg ml−1 (IgG concentration) for immune complexes or 1 μg ml−1 for monomeric IgG) and applied to FcγR-coated plates. After 1 h incubation at room temperature, bound IgG was detected using horseradish peroxidase (HRP)-conjugated goat F(ab’)2 anti-human IgG (1 h; 1:5,000; Jackson Immunoresearch). Plates were developed using the TMB (3,3′,5,5′-tetramethylbenzidine) two-component peroxidase substrate kit (KPL) and reactions were stopped with the addition of 1 M phosphoric acid. Absorbance at 450 nm was immediately recorded using a SpectraMax Plus spectrophotometer (Molecular Devices) and background absorbance from negative control samples was subtracted. Data were collected and analysed using SoftMax Pro v.7.0.2 software (Molecular Devices).
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5

FcγR Binding Assay for IgG Complexes

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Recombinant human FcγR ectodomains (Sinobiological)(5 μg/ml) were immobilized into high-binding 96-well microtiter plates (Nunc) and following overnight incubation at 4°C, plates were blocked with PBS + 2% (w/v) BSA + 0.05% (v/v) Tween20 for 2 h. IgG immune complexes were prepared by incubating for 1h at 4°C Fc variants of the anti-NP (4-hydroxy-3-nitrophenylacetyl) mAb 3B62 with NP-BSA (27 conjugation ratio, Biosearch Technologies) at a molar ratio of 1:10 (Ag:Ab). IgG immune complexes or monomeric IgG (for FcγRI) were serially diluted (1:3 consecutive dilutions in PBS starting at 10 μg/ml (IgG concentration) for immune complexes or 1 μg/ml for monomeric IgG) and applied to FcγR-coated plates. Following 1h incubation at room temperature, bound IgG was detected using HRP-conjugated goat F(ab’)2 anti-human IgG (1 h; 1:5000; Jackson Immunoresearch). Plates were developed using the TMB (3,3’,5,5’-Tetramethylbenzidine) two-component peroxidase substrate kit (KPL) and reactions stopped with the addition of 1 M phosphoric acid. Absorbance at 450nm was immediately recorded using a SpectraMax Plus spectrophotometer (Molecular Devices) and background absorbance from negative control samples was subtracted. Data were collected and analyzed using SoftMax Pro v7.0.2 software (Molecular Devices).
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6

ELISA for Influenza Antibody Quantification

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Recombinant HA (Influenza A H1N1 (A/California/04/2009 or A/Puerto Rico/8/34) or H3N2 (A/x31)), or NA (A/California/04/2009) or NP (H1N1 (A/California/04/2009) or H3N2 (A/x31)) (Sinobiological) (3 μg ml−1) were immobilized into high-binding 96-well microtitre plates (Nunc) and after overnight incubation at 4 °C, plates were blocked with PBS plus 2% (w/v) BSA and 0.05% (v/v) Tween20 for 2 h. After blocking, plates were incubated for 1 h with serially diluted IgG antibodies or serum samples (1:3 consecutive dilutions in PBS starting at 1 μg ml−1 for monoclonal antibodies or 1:10 for serum samples), followed by HRP-conjugated goat anti-human IgG (minimal cross-reactivity to mouse IgG) for human monoclonal antibodies or goat anti-mouse IgG (minimal cross-reactivity to human IgG) for serum samples (1 h; 1:5,000; Jackson Immunoresearch). Plates were developed using the TMB two-component peroxidase substrate kit (KPL) and reactions were stopped with the addition of 1 M phosphoric acid. Absorbance at 450 nm was immediately recorded using a SpectraMax Plus spectrophotometer (Molecular Devices) and background absorbance from negative control samples was subtracted. Data were collected and analysed using SoftMax Pro v.7.0.2 software (Molecular Devices).
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7

Neutralization of SARS-CoV-2 Pseudoviruses

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Neutralization activity of IgG1 Fc domain variants was measured as previously described35 (link). Briefly, HT1080ACE2 cells were seeded in 96 U-well black plates 24 h prior to infection with SARS-CoV-2WT, SARS-CoV-2MA10 or SARS-CoV-2B.1.351 pseudoviruses. Pseudovirus particles were pre-incubated with mAbs (four-fold serially diluted starting at 10 μg/ml) for 1 h at 37°C and then added to a monolayer of HT1080ACE2 cells. Following a 48-h incubation at 37°C, cells were carefully washed with PBS and lysed with Luciferase Cell Culture Lysis reagent (Promega) for 15 min. Nano luciferase activity was detected by adding Nano-Glo Luciferase Assay System (Promega) and measured by SpectraMax Plus spectrophotometer (Molecular Devices), using 0.5 s integration time. Data were collected and analyzed using SoftMax Pro v.7.0.2 software (Molecular Devices). Relative luciferase units were normalized to those derived from cells infected with the relevant SARS-CoV-2 pseudoviruses in the absence of mAbs.
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8

Neutralization of SARS-CoV-2 Pseudoviruses

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Neutralization activity of IgG1 Fc domain variants was measured as previously described36 (link). Briefly, HT1080ACE2 cells were seeded in 96 U-well plates 24 h prior to infection with SARS-CoV-2MA10 pseudoviruses. Pseudovirus particles were pre-incubated with mAbs (four-fold serially diluted starting at 10 μg/ml) for 1 h at 37°C and then added to a monolayer of HT1080ACE2 cells. Following a 48-h incubation at 37°C, cells were carefully washed with PBS and lysed with Luciferase Cell Culture Lysis reagent (Promega) for 15 min. Nano luciferase activity was detected by adding Nano-Glo Luciferase Assay System (Promega) and measured by SpectraMax Plus spectrophotometer (Molecular Devices), using 0.5 s integration time. Data were collected and analyzed using SoftMax Pro v.7.0.2 software (Molecular Devices). Relative luciferase units were normalized to those derived from cells infected with SARS-CoV-2MA10 pseudoviruses in the absence of mAbs.
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9

Viral Inhibition Assay in Huh7-ACE2 Cells

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Viruses were first titrated to normalize input. To characterize inhibition, Huh7-ACE2 cells were seeded at a density of 2 × 104 cells per well in 96-well plates. The following day, cells were infected with 0.05 MOI of virus and treated with inhibitor in a fivefold dilution series. One day post infection, cells were lysed and luminescence quantified using the Nano-Glo Luciferase Assay System (Promega), according to the manufacturer’s instructions, with a SpectraMax i3× Multi-Mode Microplate Reader (Molecular Devices) using SoftMax Pro v.7.0.2 software (Molecular Devices). IC50 values were derived by fitting a nonlinear regression curve to the data in GraphPad Prism v.9.4 (Dotmatics).
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10

SARS-CoV-2 RBD Antibody Binding Assay

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Recombinant SARS-CoV-2 RBD was immobilized (1 μg/ml) into high-binding 96-well microtitre plates (Nunc) and after overnight incubation at 4 °C, plates were blocked with PBS plus 2% (w/v) BSA for 2 h. After blocking, plates were incubated for 1 h with serially diluted IgG antibodies or serum samples (1:3 consecutive dilutions in PBS starting at 100 ng/ml), followed by HRP-conjugated goat anti-human IgG (1 h; 1:5,000; Jackson Immunoresearch). Plates were developed using the TMB two-component peroxidase substrate kit (KPL) and reactions were stopped with the addition of 1 M phosphoric acid. Absorbance at 450 nm was immediately recorded using a SpectraMax Plus spectrophotometer (Molecular Devices) and background absorbance from negative control samples was subtracted. Data were collected and analysed using SoftMax Pro v.7.0.2 software (Molecular Devices).
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