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Gel pro analyzer 3

Manufactured by Media Cybernetics
Sourced in United States

The Gel-Pro Analyzer 3.1 is a laboratory instrument designed for gel electrophoresis analysis. It captures and digitizes gel images, providing quantitative data on sample separation and band intensity.

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23 protocols using gel pro analyzer 3

1

Western Blot Analysis of Protein Expression

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Cells were harvested and lysed in RIPA buffer (Sigma Aldrich) and protein concentrations were measured by a BCA protein detection kit (Pierce, Rockford, IL, USA). Proteins were separated by SDS-PAGE and transferred to nitrocellulose membranes. Primary antibodies against KLF4 (1:1000, Santa Cruz), β-actin (1:5000, Sigma Aldrich), p21 (1:1000, Cell Signaling), HA-Tag (1:1000, Santa Cruz), Cyclin E1(1:1000, Abcam), p53 (1:1000, DAKO), p16 (1:1000, Santa Cruz), Suv39H1 (1:1000, Santa Cruz), survivin (1:1000, Abcam) and horseradish peroxidase conjugated secondary antibodies (Zhongshan, Beijing, China) were used to detect specific proteins according to the standard procedures. Finally, the membranes developed with a Luminol Detection System (Santa Cruz). Protein expression was quantified using a Gel EDAS 290 analysis system (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA) and Gel-Pro Analyzer 3.1 software (Media Cybernetics, Silver Spring, MD, USA).
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2

Protein Extraction and Western Blot Analysis

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Cells were lysed in ice-cold Radio-Immunoprecipitation Assay (RIPA)
buffer containing protease and phosphatase inhibitor cocktail, EDTA-free (Thermo
Scientific, Rockford, IL USA). After sonication and centrifugation, equal
amounts of proteins were separated by SDS-PAGE. After electroblotting, the PVDF
membranes were incubated with primary and HRP–conjugated secondary
antibodies. Immunoreactive proteins were detected by enhanced chemiluminescence
solution (Thermo Scientific). Images were captured by a luminescent image
analyzer with a CCD camera (ImageQuant LAS 4000 mini, GE Helthcare, Pittsburgh,
PA, USA) and quantified by densitometric analysis using Gel-Pro Analyzer 3.1
software (Media Cybernetics Inc., Rockville, MD, USA).
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3

Western Blot Analysis of Nrf2 and Keap1

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Cells were harvested at indicated time points and lysed in RIPA buffer (Sigma). Western blot analysis was performed with the use of conventional protocols as described previously [22 (link)]. Nuclear and cytoplasmic proteins were extracted in accordance with the manufacturer's instructions (Pierce Biotechnology). The antibodies and dilutions used included anti-β-actin (AC-15; 1:2000; Sigma), anti-Keap1 (D1G10; 1:1000; Cell Signaling Technology), anti-Nrf2 (D1Z9C; 1:1000; Cell Signaling Technology), anti-LaminB (M-20; 1:1000; Santa Cruz), anti-GFP (A00185.01; 1:1000; Santa Cruz). After extensively washed, the membranes were incubated with anti-mouse or anti-rabbit IgG-horseradish peroxidase conjugate antibody (Zhongshan Company) for 1 h at room temperature and developed with a Luminol chemiluminescence detection kit (Santa Cruz). Membranes were reprobed for β-actin antibodies for normalization and accurate quantification. Protein expression level was quantified by using a Gel EDAS 293 analysis system (Cold Spring USA Corporation) and Gel-Pro Analyzer 3.1 software (Media Cybernetics).
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4

Protein Extraction and Western Blot Analysis

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Cells were lysed in ice-cold Radio-Immunoprecipitation Assay (RIPA)
buffer containing protease and phosphatase inhibitor cocktail, EDTA-free (Thermo
Scientific, Rockford, IL USA). After sonication and centrifugation, equal
amounts of proteins were separated by SDS-PAGE. After electroblotting, the PVDF
membranes were incubated with primary and HRP–conjugated secondary
antibodies. Immunoreactive proteins were detected by enhanced chemiluminescence
solution (Thermo Scientific). Images were captured by a luminescent image
analyzer with a CCD camera (ImageQuant LAS 4000 mini, GE Helthcare, Pittsburgh,
PA, USA) and quantified by densitometric analysis using Gel-Pro Analyzer 3.1
software (Media Cybernetics Inc., Rockville, MD, USA).
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5

Platelet Protein Analysis by Western Blot

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Platelets (1-2 9 10 9 mL À1 ) were lysed in loading buffer (62.5 nM Tris-HCl, pH 6.8, 25% glycerol, 2% SDS, 0.01% bromophenol blue and 5% 2-mercaptoethanol) and subjected to electrophoresis on a 12% SDS-PAGE and electrotransferred to nitrocellulose membranes (GE Healthcare, Chalfont St Giles, Buckinghamshire, UK). After blocking, membranes were incubated overnight at 4 °C with a primary monoclonal Ab against VP1, followed by an HRP-linked secondary Ab (Dako, Glostrup, Denmark) for 1 h at 22 °C. Protein bands were visualized by ECL reaction and optical density was semi-quantitated using Gel-Pro analyzer 3.1 software (Media Cybernetics Inc, Rockville, MD, USA). Values from blot re-probes against actin were used for normalization of data for protein loads.
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6

SDS-PAGE Molecular Weight Estimation

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Tris-glycine discontinuous gel system under denaturing conditions. Electrophoresis was performed on either 10 or 12% separating gel, overlaid with 5% stacking gel, at a constant current of 30 mA for 4 hours. The following reference proteins were used as molecular weight markers (Sigma-Aldrich), and ran concomitantly in SDS-PAGE: α-lactalbumin (14,200 Da), trypsin inhibitor (21,500 Da), bovine carbonic anhydrase (31,000 Da), egg albumin (42,699 daltons), bovine serum albumin (66,200 Da) and phosphorylase b (97,400 Da). Gel-Pro Analyzer 3.1 software (Media Cybernetics, Washington -MD 20850, USA) was used for estimating the relative molecular weight (Mwt) and relative mobility (Rf) values.
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7

Visualizing RNA Subunits in Cell Lines

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NCM460 and HepG2 cell lines were treated with IL-6 and/or aspirin (0.5 or 1.5 mM) for 24 hours. Total RNA was extracted starting from the same cell number. The 28S and 18S RNA subunits were visualized by loading RNA in a 1% agarose gel stained with ethidium bromide. The intensity of bands was evaluated with the densitometric software GelPro analyzer 3.0 (Media Cybernetics, Silver Spring, MD).
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8

Western Blot Protein Detection Protocol

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Cells were lysed in a buffer containing 10 mM Tris-HCl pH 7.4, 150 mM NaCl, 50 mM NaF, 1% NP-40, 0.5% SDS containing protease inhibitors cocktail (Roche), 1 mM Na3VO4, 1 mM phenylmethylsulfonyl fluoride, and 1 mM dithiothreitol. Thirty micrograms of total protein were separated by SDS-PAGE and electro-blotted onto nitrocellulose (0.45μm, Bio-Rad) or PVDF (0.2 μm, EMD Millipore) membrane. The membranes were blocked in 5% skimmed milk (Santa-Cruz) and probed with primary antibodies. The blots were washed, incubated with secondary horseradish peroxidase-conjugated secondary antibodies and developed by enhanced chemiluminescence (ECL, ThermoFisher Scientific). Western blot densitometry was performed using Gel-Pro Analyzer 3.0 software (Media Cybernetics). The optical densities were normalized to those of control samples.
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9

Protein Expression Analysis in Tumor Cells

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The cells were lysed in RIPA buffer (Beyotime Institute of Biotechnology) for 10 min on ice, and then the supernatant was collected by centrifugation (250 × g; 4°C; 5 min) to remove cell debris. The protein concentration was measured using a Bradford assay (Bio-Rad Laboratories, Inc.). Protein samples (20 µg/well) were loaded on a 10% (w/v) tris-HCl SDS-PAGE gel for electrophoresis and transferred to PVDF membranes (cat. no. 3010040001; Sigma-Aldrich; Merck KGaA), which were blocked in 5% bovine serum albumin (Sigma-Aldrich; Merck KGaA) for 45 min at room temperature. Subsequently, the membrane was probed with anti-MUC1 (1:3,000; cat. no. ab36690; Abcam), anti-PDL1 (1:1,000; cat. no. ab238697; Abcam) or anti-β-actin (1:1,000; cat. no. ab8226; Abcam) primary antibodies at 4°C overnight. The signal was detected using a goat anti-mouse secondary antibody (1:3,000; cat. no. ab205719; Abcam) conjugated to horseradish peroxidase at room temperature for 1 h. Band signals were visualized using the Immobilon Western Chemiluminescent substrate (Merck KGaA) and detected using the Odyssey CLx (LI-COR Biosciences). Furthermore, PDL1 expression in tumor tissues was analyzed using Gel-Pro Analyzer 3.0 (Media Cybernetics, Inc.).
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10

Evaluating GDNF and NGF Protein Expression

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The protein expression of GDNF and NGF was investigated by western blot analysis. The specimen for each groups were placed into a 24-well plate and then Schwann cells were seeded on the surface of disks at the density of 2 × 105 cells per well. After incubation for 48 h, the protein concentration was determined using a bicinchoninic acid protein assay kit (Beyotime, Shanghai, China). Equal amounts of protein (40 μg) were resolved by SDS-PAGE electrophoresis, and then transferred to polyvinylidene fluoride film (Millipore, Bedford, MA, USA). The membranes were blocked with 5% non-fat milk in TBST (0.1% Triton X-100 in TBS) buffer for 90 min, and then incubated with primary antibodies against NGF (rabbit anti-rat, 1:1000, cat. no. WL0151, Wanleibio, Shenyang, China) and GDNF (rabbit anti-rat, 1:400, cat. no. PB0045, Boster Biological Technology, Ltd, Wuhan, China) overnight at 4 °C. Then, the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (goat anti-rabbit, 1:5000, cat. no. A0208, Biyuntian, China) and visualized with an ECL reagent (Qihai Biotech, China). The intensity of the bands, which were representative of protein levels, were assessed using Gel-Pro-Analyzer 3.0 (Media Cybernetics, Rockville, MD, USA).β-actin was used to normalize target proteins [33 (link), 34 (link)].
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