The largest database of trusted experimental protocols

9 protocols using inova 400 mhz nmr spectrometer

1

Ln(III) Content Determination and ADPA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chemicals used were purchased from commercial suppliers and used without further purification. The Ln(III) content of stock solutions was determined by complexometric titrations with a standardized solution of EDTA in the presence of 0.1M ammonium acetate and aqueous arsenazo(III). 44 (link) The synthesis of ADPA was performed with a minor deviation from a literature procedure.45 Melting point measurements were performed on a Thermo Scientific Electrothermal MEL-TEMP 3.0. NMR studies were performed on a Varian Inova 400 MHz NMR spectrometer and chemical shifts were measured relative to residual solvent signals and are given with respect to TMS.
+ Open protocol
+ Expand
2

Synthesis and Characterization of RNA Duplexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA duplexes
were synthesized by standard solid-phase phosphoramidite
chemistry (for detailed procedures see the SI). DNA templates were purchased from Integrated DNA Technologies.
Ribonucleotide monomers were purchased from Sigma-Aldrich as disodium
salts. Each oligonucleotide duplex was titrated with the selected
ribonucleotide monophosphate (up to ca. 250 mM) dissolved in a 9:1
mixture of H2O/D2O. Monomer solutions contained
the same concentration of the oligonucleotide duplex (1.5 mM) in order
to maintain a constant duplex concentration throughout the titration
experiments. This was also the case for the total cation (Na+) concentration (500 mM). The pH of both duplex and monomer solutions
was adjusted to 7.0 (±0.1) with either NaOH or HCl, and the NMR
spectra were acquired at 12 °C, unless otherwise noted. Monomer
titration, pH, and temperature gradient experiments were performed
on a Varian INOVA 400 MHz NMR spectrometer. Initial concentrations
of the duplex and monomer were determined by UV (NanoDrop) measurements
and confirmed by (31 (link))P NMR (161 MHz) spectroscopy
using a potassium sodium phosphate buffer concentrate (Supelco), which
was applied using a coaxial NMR tube. The latter technique was also
used to measure monomer concentrations throughout the titrations.
+ Open protocol
+ Expand
3

Analytical Characterization of Organic Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents and solvents were of analytical grade and used without further purification. NMR spectra were obtained on a Varian INOVA 400 MHz NMR spectrometer at 25 °C. Chemical shifts are reported as δ values (parts per million) using the residual solvent peak as an internal reference. Data for 1H NMR are reported in the following order: chemical shift, multiplicity (s, singlet; d, doublet; t, triplet; sept, septuplet; dd, double doublet; dt, double triplet; m, multiplet), number of protons, coupling constant (Hz). Data for 13C NMR are reported as δ values (parts per million). UV spectra were obtained on a Nanodrop 2000c spectrophotometer. High-resolution mass spectra (HRMS) were obtained on a JEOL AccuTOF with ESI/APCI ion sources coupled to an Agilent 1100 HPLC system. HPLC analysis was performed on a Shimazdu HPLC fitted with a C-18 reversed-phase column (Phenomenex, 4.6 mm × 250 mm) with a flow rate of 0.5 mL/min using CH3OH–H2O 3:1 with 0.1% NH4OAc mobile phase. The purity of final products are >95%.
+ Open protocol
+ Expand
4

Metabolite Analysis of In Vitro Fecal Fermentation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The production of various metabolites during in vitro fecal fermentation was analyzed using proton nuclear magnetic resonance (1H-NMR), following the methods of Lee et al. (2011 ). In brief, the extracts were recovered using centrifugation after agitating the dissolved samples in a water bath at 60°C for 30 min. The supernatant was then mixed with an equal volume of deionized water containing 10% deuterium oxide (D2O) and 1 mM sodium 2,2-dimethyl-4-silapentane-1-sulfonic acid (DSS); the pH of the mixture was adjusted to 6 ± 0.01. The mixtures (700 µL) were transferred into 0.5-mm NMR tubes, and 1H-NMR spectra were acquired on a Varian INOVA 400 MHz NMR spectrometer (Varian Inc., Palo Alto, CA, USA). Individual spectra were identified and quantified using the Processor and Profiler module of the Chenomx NMR suite, V.6.1 (Chenomx, Inc., Edmonton, Alberta, Canada).
+ Open protocol
+ Expand
5

Characterization of 2-AIpG and Gp-AI-pG Stability

Check if the same lab product or an alternative is used in the 5 most similar protocols
2-AIpG and Gp-AI-pG were synthesized and purified as previously described (Li et al., 2017 (link); Zhang et al., 2017 (link)). To characterize the stability of these substrates during the crystal soaking procedure, samples of 2-AIpG and Gp-AI-pG were prepared in crystallization buffer and monitored by 31P NMR. These samples were placed in a Shigemi tube with a co-axial insert containing D2O for locking the NMR signal. All NMR spectra were taken on a Varian INOVA 400 MHz NMR spectrometer at 25°C and analyzed by integration of peaks using MestReNova software. 31P NMR signals are referenced to internal trimethyl phosphate added after the experiments. The NMR spectra were shown in Figure 3—figure supplement 1 and Figure 4—figure supplement 1.
+ Open protocol
+ Expand
6

Analytical Characterization of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols

1H- and 13C-NMR spectra were acquired at 25 °C using a Varian Inova 400 MHz NMR spectrometer. High-resolution mass spectra were measured using a Thermo scientific LTQ/XL Orbitrap, with FTMS analyzer, a mass range of 100–2000 and a resolution of 30 000. For LC-ESI-MS, gradient separation was obtained using a Sun Fire C-18 analytical HPLC column (5 mm, 4.6 × 150 mm, Waters) with a mobile phase of 0–100% MeOH over 30 min at a flow rate of 1 mL min−1. HPLC separation was performed on Agilent 1260 Infinity semi-preparative HPLC system with an Agilent Eclipse XDB-C18 column (5 μm, 10 × 250 mm, Agilent technologies, USA) monitored using an Agilent photodiode array detector. Detection was carried out at 220, 254, 280, 350 and 400 nm. All chemical reagents were purchased from Sigma-Aldrich (USA) and used without further purification. Medium pressure liquid chromatography (MPLC) separations were carried out using Biotage system with normal silica and reversed-phase pre-packed columns. UV-Detection was carried out at 220 and 254 nm. TLC was performed on pre-coated TLC plates with silica gel 60 F254 (layer thickness 0.2 mm, Merck, Darmstadt, Germany).
+ Open protocol
+ Expand
7

Characterization of Docetaxel Nanomicelle Formulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To perform the 1H NMR experiment, the freeze-dried powder of DTX nanomicellar formulation (F-2) and blank nanomicellar formulation were dissolved in D2O at a concentration of 2 mg/mL. The 1H NMR spectra was recorded on Varian Inova 400 MHz NMR spectrometer (Varian, Palo Alto, CA, USA) at 25 °C. Chemical shifts were measured in parts per million (0–12 ppm) with a delay period of 4 s. For easy comparison, spectra from all three samples including solvent blank (D2O) are plotted in one graph (Figure 2a). FT–IR spectra was acquired on Thermo-Scientific Nicolet iZ10, with an ATR diamond and DTGS detector, using pure DTX, blank, and DTX loaded nanomicelles (F-2) at a scanning range of 650–4000 cm−1 (Figure 3). XRD analysis was carried out to determine the crystallinity of the formulation components of the DTX alone, DTX nanomicelles (F-2), and blank nanomicelles (Figure 4). The MiniFlex-automated X-ray diffractometer (Rigaku, The Woodlands, TX, USA) was used which is equipped with Ni-filtered Cu Kα radiation operating at 30 kV and 15 mA at room temperature. The diffraction angle covered was from 2θ = 5° to 2θ = 40° with a step size of 0.05°/step and a counting time of 2.5 s/steps (1.2°/min) for 30 min. The diffraction patterns were processed using Jade 8+ software (Materials Data, Inc., Livermore, CA, USA).
+ Open protocol
+ Expand
8

Characterization of NMR-active Complexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Varian Inova 500 MHz NMR spectrometer (11.7 T) equipped with FTS Systems TC-84 Kinetics Air Jet Temperature Controller was used to collect 1H NMR spectra. 13C NMR spectra were acquired using a Varian Mercury 300 MHz or 400 MHz NMR spectrometer. Proton relaxivity experiments were performed at 1.4 T (34 °C) on a Nananalysis NMR spectrometer, at 4.7 T (37 °C) on a Bruker preclinical MRI scanner or at 9.4 T, (37 °C) on a Varian Inova 400 MHz NMR spectrometer. Z-spectra were collected on a Varian Inova 500 MHz NMR spectrometer (11.7 T). All pH measurements were made by utilizing an Orion 8115BNUWP Ross Ultra Semi Micro pH electrode connected to a 702 SM Titrino pH. ThermoFinnigan LCQ Advantage IonTrap LC/MS equipped with a Surveyor HPLC system was used to for mass spectrometry data of the complexes. Iron concentration was determined by using a Thermo X-Series 2 ICP-MS as reported.42 , 47 (link)
+ Open protocol
+ Expand
9

Synthesis and Characterization of Substituted Pyridines

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents were purchased without further purification unless otherwise noted. Reactions were monitored using thin-layer chromatography (TLC) on commercial silica gel plates (GF254). Visualization of the developed plates was performed under UV light (254 nm). Flash column chromatography was performed on silica gel (200–300 mesh). 1H and 13C NMR spectra were recorded on a Varian INOVA 400 MHz NMR spectrometer at 25 °C. Chemical shifts (δ) are reported in ppm referenced to an internal tetramethylsilane standard, or the DMSO-d6 residual peak (δ 2.50) for 1H NMR. Chemical shifts of 13C NMR are reported relative to CDCl3 (δ 77.0) or DMSO-d6 (δ 39.5). The following abbreviations were used to describe peak splitting patterns when appropriate: br s = broad singlet, s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet. Coupling constants, J, were reported in Hertz unit (Hz). High-resolution mass spectra (HRMS) were obtained on a JEOL AccuTOF with ESI/APCI ion sources coupled to an Agilent 1100 HPLC system. HPLC analysis was performed on a Agilent 1100 series (DAD detector) fitted with a C-18 reversed-phase column (XTerra RP 18, 5 μM, 4.6 × 250mm) with a flow rate of 0.8 mL/min using CH3CN-H2O mobile phase and detected under 254 nm UV light. The purity of final products is >95%. Compounds 7CC5 and 7CC5–14 were purchased from Maybridge and Vitas, respectively.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!