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11 protocols using anti p53

1

Western Blot Analysis of Cell Signaling

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Cells were lysed with radio immunoprecipitation assay buffer (RIPA) containing 1 mmol/L PMSF (Solarbio, China). Protein extractions were separated by 12% SDS-PAGE gels and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Germany). The membranes were incubated overnight at 4 °C with primary antibodies specific for anti-β-actin, anti-CDK2, anti-CyclinD1, anti-CyclinE, anti-PCNA, and anti-P53 (1:1,000; Wanleibio), anti-Bcl-2, anti-Bax, anti-Caspase9, anti-FOXC1, and anti-MyoD1 (1:1,000; Abways Technology), anti-MyoG, (1:1,000; Abcam, Cambridge, England). After incubation with secondary antibodies, signals were detected using a chemiluminescence system (Bio-Rad, USA).
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2

Apoptosis Signaling in Granulosa Cells

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Granulosa cells were incubated with 3-NPA at 5.0 mmol/l for 24 h and then were harvested. The total protein was extracted using RIPA Lysis Buffer and 10% phenylmethanesulfonyl fluoride (Beyotime, China). Protein concentration was determined by using a BCA Protein Assay Kit (Beyotime, China). Approximately, the same amount of protein was separated using 10–12% SDS-PAGE, transferred electrophoretically onto the polyvinylidene membrane (Bio-Rad) and blocked with 5% nonfat dry milk. The primary antibodies used in the present study were anti-Caspase 3 (CST, U.S.A.), anti-Bcl-2 (Wanlei Biotechnology, China), anti-p53 (Wanlei Biotechnology, China), anti-Bax (Bioss Biotechnology, China), anti-β-actin (TransGen Biotechnology, China). The membrane was incubated with the primary antibody solution overnight at 4°C, and then washed four times with the TBST (TBS, 0.1% Tween 20). The corresponding secondary antibody (1:5000) was added and incubated at room temperature for 1 h. The protein bands were visualized by using the BeyoECL Plus (a chemiluminescence reaction; Beyotime, China) in an Image Lab software (Bio-Rad, U.S.A.). The bands were quantified using an ImageJ software (NIH, U.S.A.).
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3

Western Blot Analysis of Cell Lysates

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We collected the treated HEK293 cells, washed them once with PBS, added the proteolytic lysate, and lysed the cells on ice. The cells were centrifuged at 4 ℃ and 13,000 r/min for 10 min. Store in tube at − 80 °C. The BCA protein concentration test was used to calculate the protein concentration of the sample. Separated on a 10% SDS polyacrylamide gel. It is then electrically transmitted to the PVDF membrane. Before incubating the primary antibody, tailor the PVDF membrane according to the molecular weight range of the target antibody. Use anti-HO-1 (wanleibio, China), anti-Nrf2 polyclonal (wanleibio, China), anti-NF-κB, anti-NQO1 (Solarbio, China), anti-keap1 (wanleibio, China), anti-P53 (wanleibio, China), anti-Lamin B, anti-caspase-3 (Solarbio, China) and cleaved caspase-3 (Solarbio, China) for western blotting. Finally, the cut PVDF membrane was placed on a plastic wrap and an appropriate amount of ECL kit was taken. Medium volumes of liquids A and B were mixed, mixed and added to the surface of the membrane, transferred to a gel imaging analyzer, and exposed in a chemical light-sensitive mode. After exporting photos in TIF format, analyze the optical density of each band under ImageJ software18 (link).
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4

Western Blot Protein Expression Analysis

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Cells were lysed in RIPA lysis buffer (BD Pharmingen, San Diego, CA, USA), protein concentration was measured by BCA reagent kit (Beyotime Institute of Biotechnology, Haimen, China). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was used to separate cellular lysates, then transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Boston, MA, USA). The transfected membranes were blocked in 5% skim milk and incubated in 4°C overnight using the following primary antibodies: anti-ATF1 (1:1,000), anti-ATM (1:1,000), anti-ATM (phospho-1981; 1:5,000) (all from Abcam, Cambridge, MA, USA), anti-p53 (1:800), anti-p21 (1:500), anti-Bax (1:1,000) and anti-Bcl-2 (1:500) (all from Wanleibio, Shenyang, China), anti-GAPDH (1:3,000; Proteintech Group, Inc., Chicago, IL, USA). Then incubated with horseradish peroxidase-conjugated secondary antibody, goat anti-rabbit (1:5,000) or goat anti-mouse (1:5,000) (both from Cell Signaling Technology, Inc., Danvers, MA, USA). All bands were visualized with enhanced chemiluminescence (ECL) kit (Millipore).
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5

Protein Expression Profiling in Bovine Myoblasts

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Total proteins of bovine myoblasts were prepared with radio immunoprecipitation assay (RIPA) lysis buffer (Solarbio, Beijing, China). Proteins were fractionated on 12% SDS-PAGE gels and transferred to polyvinylidene difluoride (PVDF) membranes (Thermo Fisher Scientific). Blots were incubated overnight with primary antibodies specific for anti-CyclinD1 (#ab226977), anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH, #ab9485), anti-MyoD (#ab16148) (Abcam, Cambridge, UK), anti-INSR (#WL02857), anti-PCNA (#WL01804), anti-CDK2 (#WL01543), anti-CyclinE (#WL01072), anti-Bcl-2 (#WL01556), anti-P53 (#WL01919), anti-P21 (#WL0362), anti-MyoG (#WL01132), anti-MyHC (#WL02785), and anti-Bax (#WL01637) (Wanleibio, Haerbin, China) at 4°C. After incubation with secondary antibodies, the membranes were quantified with the ChemiDoc XRS system (Bio-Rad, Hercules, CA, USA).
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6

Cytotoxicity Evaluation of C2NP-Scaffolds

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Scaffolds (7560 and 8634) were derived from M13mp18 which was donated by Prof. Dr. B. Högberg (Karolinska Institutet, Sweden). C2NP and single-stranded DNA was synthesized by Bioneer (Daejeon, Korea). K299 cells (human anaplastic large cell lymphoma cell line) were obtained from CoBioer (Nanjing, China). Agarose was supplied by Biowest (Nuaill´e, France). Fetal bovine serum (FBS) was purchased from BI (Kibbutz, Israel). Cell apoptosis assay kit, cell cycle kit, DCFH-DA cellular reactive oxygen species assay kit, and DOX hydrochloride (DOX∙HCl) were obtained from Solarbio (Beijing, China). Dihydrochloride (DAPI), ethidium bromide (EB), 1Kbp DNA Marker, DNA loading buffer, 4% paraformaldehyde, phosphate-buffered solution (PBS) powder, and Difco Skim Milk were supplied by Solarbio (Beijing, China). The following antibodies were used: anti-p53 (catalog number: WL01333; Wanleibio). Rabbit monoclonal anti-β-actin (1:1000, catalog number WL01774; Wanleibio, China) was used as a housekeeping protein. All other chemicals were obtained from Aladdin (Shanghai, China). All commercial chemicals and agents were used without any purification and modification.
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7

Western Blot Analysis of Key Proteins

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The western blotting protocols followed previous study (Wei et al., 2016 (link)). The primary antibodies used included: anti-Dmrt1 (1∶500; Santa Cruz Biotechnology, USA), anti-TLR2 (1∶200; Santa Cruz Biotechnology, USA), anti-TLR5 (1∶200; Santa Cruz Biotechnology, USA), anti-TLR4 (1∶200; Santa Cruz Biotechnology, USA), anti-NF-κB (1∶200; Santa Cruz Biotechnology, USA), anti-TNFα (1∶100; Proteintech Group, China), anti-IL-6 (1∶100; Proteintech Group, China), anti-PCNA (1∶200; Boster, China), anti-inositol-requiring enzyme-1 (IRE1) (Biosynthesis Biotechnology, China), anti-Chop (Biosynthesis Biotechnology, China), anti-p53 (1∶200; Wanlei Biotechnology, China), anti-cyclin-D1 (1∶200; Boster, China), anti-Plzf (1∶300; Sino Biological, China), anti-caspase-3 (Biosynthesis Biotechnology, China), and anti-GAPDH (Tianjin Sungene Biotech, China). Band intensities from three independent experiments were determined by densitometry using NIH ImageJ and the significance of differences was determined by Student’s t-test.
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8

Oxidative Stress and Apoptosis Biomarkers

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Diquat (Cat#: 6385-62-2) and melatonin (Cat#: 73-31-4) were purchased from Sigma-Aldrich (St. Louis, MO, USA). The antibodies anti-Sod1 (Cat#: WL01846), anti-Gpx1 (Cat#: WL02497a), anti-Bax (Cat#: WL01637), anti-Bcl2 (Cat#: WL01556), anti-Cleaved Caspase3 (Cat#: WL01992), anti-P53 (Cat#: WL01919), anti-ZO-1 (Cat#: WL03419), anti-Occludin (Cat#: WL01996), anti-β-catenin (Cat#: WL0962a), and anti-Connexin43 (Cat#: WL02837) were purchased from Wanleibio (Shenyang, China), while anti-Tubulin (Cat#: AF1216) was obtained from Beyotime (Shanghai, China). Unless otherwise indicated, the remaining reagents and chemicals used in this study were purchased from Sigma-Aldrich.
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9

Western Blot Analysis of Cell Signaling

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Western blot was performed as we previously reported [25 (link)]. The antibodies used in this article are listed as follows: anti-p57 (1 : 500, Cell Signaling Technology, Danvers, Massachusetts, USA), anti-p53 (1 : 500, Wanleibio, Xi'an, China), anti-p-p53 (1 : 500, Wanleibio, Shenyang, China), anti-GAPDH (1 : 5000; Genesci, Beijing, China), anti-PCNA (1 : 1000, Boster, Wuhan, China), anti-Cyclin A (1 : 300, Santa Cruz, Dallas, Texas, USA), anti-Cyclin E (1 : 300, Santa Cruz), anti-OCT4 (1 : 500, Santa Cruz), anti-NANOG (1 : 500, PeproTech, Rocky Hill, New Jersey, USA), anti-SOX2 (1 : 1000, Proteintech Group, Rosemont, Illinois, USA), horse-radish peroxidase-conjugated anti-rabbit antibody (1 : 3000, Boster), and anti-mouse antibody (1 : 2000; Boster).
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10

Antibodies and Reagents for Cell Line Studies

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Anti-DJ-1 antibodies were purchased from Abcam (Cambridge, US). Anti-p53, Bax, and cleaved caspase-3 antibodies were purchased from Wanleibio (Shenyang, China). FITC-labeled goat anti-rabbit IgG, phenylmethanesulfonyl fluoride (PMSF), and phosphorylated protease inhibitors were purchased from Servicebio (Wuhan, China). Anti-GAPDH and goat anti-rabbit antibodies were purchased from Proteintech (Chicago, IL, USA).
Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum (FBS) were obtained from Biological Industries (Palestine). 2-(4-Amidinophenyl)-6-indolecarbamidine dihydrochloride (DAPI), penicillin-streptomycin, Annexin V-FITC Apoptosis Detection kit, and SDS polyacrylamide gel electrophoresis were purchased from Beyotime (Shanghai, China). Hematoxylin and eosin (H&E) and Nissl staining kit were purchased from Sigma (St. Louis, MO, USA). BCA protein assay kits was obtained from Biosharp (Hefei, China). RIPA lysis buffer and nitrocellulose membrane were provided by Millipore (Billerica, MA, USA). The hippocampal neuronal cell line (HT22) and Vero cell line (Vero) were purchased from Procell Life Science (Wuhan, China). TgCtwh3 tachyzoites were kept in Vero cells, respectively, which were stored at -80℃ in our laboratory (Anhui Province Key Laboratory of Microbiology and Parasitology).
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