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5 protocols using a25022

1

Protein Interaction Verification Techniques

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Both Western blot and co-immunoprecipitation were performed as described previously [25 (link)]. For whole-cell extracts, cells were lysed with 20 mM Tris·HCl, pH 8.0, 100 mM NaCl, 0.5% NP-40, and 1 mM EDTA (NETN buffer) supplemented with Micrococcal Nuclease (1:5000, M0247S, NEB) on ice for 15 min. Cell lysates were boiled with 5× SDS loading buffer, separated by SDS-PAGE, transferred to polyvinylidene fluoride membranes, and immunoblotted with indicated antibodies. For co-IP experiments, cells were lysed with NETN buffer for 15 min on ice, followed by centrifugation at 12,000 rpm for 10 min at 4 °C. Supernatants were then transferred into new Eppendorf tubes and incubated with either Flag beads (L00425, GenScript) for 4 h or Protein A/G plus agarose beads (sc-2003, Santa Cruz) conjugated with indicated antibodies overnight at 4 °C with rotation. Beads were subsequently washed three times with NETN buffer and boiled with 1× SDS loading buffer. To avoid the noise of light/heavy chains, the secondary antibodies used for the immunoprecipitation assays including mouse anti-rabbit IgG LCS (A25022, 1:5000) and goat anti-mouse IgG LCS (A25012, 1:5000) were obtained from Abbkine.
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2

Western Blot Analysis of FTO and NOD1

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Cellular lysates were generated by using 1×SDS-PAGE loading buffer. Proteins were extracted from cells and measured with the BCA Protein Assay kit (Beyotime; P0012S), then subjected to SDS-PAGE (8%) gel and transferred to PVDF (Millipore; ISEQ00010) membranes by semidry blotting (Bio-Rad Trans Blot Turbo System). The membranes were blocked with 5% BSA. Protein was blotted with different antibodies. The antibody against FTO was diluted at 1: 500 (Beyotime; AF6936); The antibody against NOD1 was diluted at 1: 1000 (Customized by Genscript); The antibody against NOD1 of human was diluted at 1: 1000 (Absin; abs115515); Anti-Flag (Beyotime; AF519) and anti-Tubulin (Beyotime; AT819) monoclonal antibody were diluted at 1: 2,000; and HRP-conjugated anti-rabbit IgG (Abbkine; A25022) or anti-mouse IgG (Abbkine; A25012) at 1: 5,000. The results were the representative of three independent experiments. The immunoreactive proteins were detected by using WesternBrightTM ECL (Advansta). The digital imaging was performed with a cold CCD camera.
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3

Immunoprecipitation and Western Blot Analysis

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GC cells were lysed in ice‐cold M-PER buffer supplemented with protease and phosphatase inhibitor cocktails. After preclearing with 20 μl of protein A/G plus-agarose (sc-2003; Santa Cruz Biotechnology, USA) at 4 °C for 30 min, the cell lysates were incubated with anti‐HSPH1, anti‐SLC7A11, or IgG at 4 °C overnight on a gyratory shaker. Following incubation with 20 μl of protein A/G plus-agarose at 4 °C for 6 h, immunoprecipitated beads were washed with ice‐cold lysis buffer three times and boiled in 50 μL of 1 × SDS sample buffer for 8 min at 95 °C. Then, the immunoprecipitated protein complexes were analyzed by western blotting. To avoid the influence of the heavy chain, a specific secondary antibody against the mouse anti-rabbit IgG light chain (A25022, Abbkine Scientific, Wuhan, China) was used.
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4

Western Blot Analysis of Key Proteins

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RIPA buffer (P0013B; Beyotime) was used to lyse cell and tissue samples on ice, after which a BCA kit (P0012S; Beyotime) was used to measure protein concentrations in isolated samples. Proteins were then separated by SDS‐PAGE and transferred to PVDF membranes (A10600023; GE Healthcare Life Science). Blots were blocked using 5% nonfat milk, stained overnight with Abs specific for MAP2K4 (A14781, 1:1000; ABclonal), METTL3 (96391s, 1:1000; Cell Signaling Technology), or GAPDH (2118, 1:1000; Cell Signaling Technology) at 4°C, and probed with a secondary HRP‐conjugated Ab (A25022, 1:8000; Abbkine). Protein bands were then visualized with a ChemiDoc Touch Imaging System (Bio‐Rad) and radiographic film.
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5

Immunolabeling Protocol for Cartilage Markers

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The following antibodies were used in this study: rabbit anti-Col X [1:100 for immunohistochemistry (IHC); Abcam, USA; ab58632], rabbit anti-MMP-13 (1:100 for IHC; Abcam, USA; ab39012), rabbit anti-RUNX2 (1:100 for IHC; Abclone, Australia; A2851), rabbit anti-mannose receptor (1:100 for IF; Acam, USA; ab64693), rabbit anti-iNOS (1:100 for IF; Abclone, Australia; A3200), anti-rabbit IgG light chain (1:100 for IHC; Abbkine, USA; A25022), HRP-labeled goat anti-rabbit IgG H&L (1:1000 for western blots, 1:100 for IHC; Jackson Immuno Research, USA; 111-035-003), HRP-labeled goat anti-mouse IgG H&L (1:3000 for western blots; Jackson Immuno Research; 115–035-003), Alexa Fluor 594-labeled goat anti-mouse IgG H&L [1:500 for immunofluorescent labeling (I); Abcam; ab150120], and Alexa Fluor 488-labeled goat anti-rabbit IgG H&L (1:500 for IF; Abcam; ab150077).
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