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Tris buffered saline (tbs)

Manufactured by Takara Bio
Sourced in Japan, United States

Tris-buffered saline is a widely used buffer solution that maintains a stable pH and ionic environment. It consists of tris(hydroxymethyl)aminomethane (Tris) and sodium chloride (NaCl) dissolved in water. This solution is commonly used in various molecular biology and biochemical applications to maintain the appropriate pH and ionic conditions for various biomolecules and reactions.

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10 protocols using tris buffered saline (tbs)

1

Immunohistochemical Analysis of Grafted Skin

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The grafted skin tissues were embedded in Tissue-Tek® Optimal Cutting Temperature compound (Sakura Fineteck, Tokyo, Japan) and sectioned at 10-μm thickness. The sections were washed thrice with Tris-buffered saline (TBS, TaKaRa Bio, Shiga, Japan) for 10 min and blocked for 1 h in TBS (TaKaRa Bio) containing 5% donkey serum (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA, USA) and 0.3% Triton X-100 (FUJIFILM Holdings Corporation, Tokyo, Japan). The sections were then probed overnight at 4 °C with anti-CD3 (CD3-12; Abcam, Cambridge, UK, USA) and anti-CD45 (L12/201; Bio-Rad) antibodies in TBS containing 1% donkey serum and 0.3% Triton X-100. Subsequently, samples were again washed thrice with TBS for 5 min and were labelled for 1 hour at room temperature (20 °C–28 °C) with secondary antibodies conjugated with Alexa Flour 488 (Thermo Fisher Scientific). The sections were counterstained with Hoechst 33342 (Thermo Fisher Scientific) to visualise the nuclei and imaged using a fluorescence microscope (Axio Observer. D1, Carl Zeiss, Jena, Germany).
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2

Western Blot Analysis of Cellular Proteins

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Total cellular proteins were prepared as previously described [19 (link)]. For western blot analysis, 20 mg of cellular protein was subjected to sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) on a 4–15% gradient gel (Bio-Rad). The blot was transferred onto a polyvinylidene difluoride membrane using the iBlot 2 (Life Technologies), followed by blocking with Tris-buffered saline (Takara Bio, Shiga, Japan) containing 0.2% dry fat-free milk (Cell Signaling). Primary antibody reaction, horseradish-peroxidase-conjugated secondary antibody (NA934V, GE Healthcare UK Ltd., Buckinghamshire, UK) reaction, and washing steps have been previously described [30 (link)]. Bands were visualized using Amersham ECL western blotting detection reagent (GE Healthcare UK Ltd) and the ChemiDoc XRS Plus ImageLab system (Bio-Rad).
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3

Quantitative Western Blot Analysis of Proteins

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Total cellular protein was prepared as described previously [29 (link)], and the protein concentration was measured using Quick Start Bradford Reagent (Bio-Rad, Hercules, CA, USA). Twenty micrograms of protein was subjected to sodium dodecyl sulfate polyacrylamide electrophoresis (SDS-PAGE) in a 4 to 20% gradient gel (Bio-Rad), and the blot was transferred onto a polyvinylidene difluoride membrane by iBlot 2 (Life Technologies, Carlsbad, CA, USA). After blocking with 0.2% nonfat dry milk (Cell Signaling Technology, Danvers, MA, USA) in Tris-buffered saline (Takara Bio), the membrane was incubated with the primary antibodies (anti-TPD52 antibody (1/1,000 dilution; Abcam, Branford, CT, USA), anti-TPD54 antibody (1/1,000 dilution), or anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) antibody (1/10,000 dilution; Sigma-Aldrich, St. Louis, MO, USA) and the horseradish-peroxidase-conjugated secondary antibody (GE Healthcare UK Ltd., Buckinghamshire, UK)) as described previously [29 (link)]. The protein bands were visualized using Amersham ECL Western Blotting Detection Reagents (GE Healthcare) and a Chemidoc XRS Plus ImageLab System (Bio-Rad).
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4

Western Blot Analysis of Cellular Protein

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Total cellular protein was prepared as previously described (21 (link)). For western blot analysis, 20 µg of total cellular protein was analyzed using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) with a 4–20% gradient gel (Bio-Rad Laboratories, Inc.) and blotted onto a polyvinylidene difluoride membrane with iBlot2 (Thermo Fisher Scientific, Inc.). After transcription, the membrane was shaken for 1 h in Tris-buffered saline (Takara Bio, Inc.) containing 0.2% non-fat dry milk (Cell Signaling Technology, Inc.). Primary and secondary antibody reactions were performed as previously described (25 (link)). Protein bands were visualized using Amersham ECL Prime Western Blotting Detection Reagent (Cytiva) and a ChemiDoc XRS Plus Image Lab System (Bio-Rad Laboratories, Inc.), which was also used to measure the density of each band.
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5

Immunocytochemical Analysis of hCECs and Rat Corneas

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The hCECs and rat corneas were fixed in 4% paraformaldehyde (Wako). Samples were washed three times with Tris-buffered saline (TBS; Takara Bio) and incubated with TBS containing 5% normal donkey serum (Jackson ImmunoResearch, Bar Harbor, Maine, USA) and 0.3% Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) for 1 h to block non-specific reactions. Subsequently, they were incubated with the primary antibodies listed in Table 2 at 4 °C for 24 h. Samples were then washed three times with TBS and stained with Alexa Fluor 488- and AF568-conjugated secondary antibodies (Thermo Fisher Scientific) and Hoechst 33,342 (Thermo Fisher Scientific) at room temperature for 1 h. Thereafter, the stained samples were washed with TBS three times and observed under a fluorescence microscope FV3000 (Olympus, Tokyo, Japan).
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6

Western Blot Analysis of Total Cellular Proteins

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Total cellular proteins were prepared as previously described [19] . For western blot analysis, 20 mg of cellular protein was subjected to sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) on a 4-15% gradient gel (Bio-Rad). The blot was transferred onto a polyvinylidene difluoride membrane using the iBlot 2 (Life Technologies), followed by blocking with Tris-buffered saline (Takara Bio, Shiga, Japan) containing 0.2% dry fat-free milk (Cell Signaling). Primary antibody reaction, horseradish-peroxidase-conjugated secondary antibody (NA934V, GE Healthcare UK Ltd., Buckinghamshire, UK) reaction, and washing steps have been previously described [29] . Bands were visualized using Amersham ECL western blotting detection reagent (GE Healthcare UK Ltd) and the ChemiDoc XRS Plus ImageLab system (Bio-Rad).
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7

TUNEL Assay for Apoptosis Detection

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After deparaffinization with xylene and rehydration with graded alcohol solutions, the sections were incubated in 20 µg/mL of proteinase K (Boehringer; Mannheim, Germany) dissolved in TBS (Takara, Ohtsu, Shiga, Japan) for 15 min at room temperature. Then, TUNEL assay was performed using an ApopTag® Peroxidase in Situ Apoptosis Detection kit (Merck Millipore, Darmstadt, Germany) according to the manufacturer’s protocol. Apoptotic and necrotic cells were visualized with the Super Sensitive DAB (3,3′-diaminobenzidine) Substrate Pack (BioGenex, Fremont, CA, USA) according to the manufacturer’s protocol, followed by counterstaining with hematoxylin and mounting. An apoptotic cell was defined as a round or oval cell, dense with nuclear staining with DAB, and a pre-apoptotic cell was defined as a cell with cytoplasmic and nuclear staining with DAB, otherwise normal in cellular appearance.
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8

Embryonic Eye Tissue Analysis in Mice

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Pregnant female mice (C57/BL6; 10–16 weeks old; E18.5) were acquired from SLC Japan (Shizuoka, Japan) for analysis of embryonic eyes. Frozen tissues obtained at E18.5 were sectioned, air-dried, and incubated for 1 h with TBS (TaKaRa Bio, Shiga, Japan) containing 5% donkey serum and 0.3% Triton X-100 (Sigma-Aldrich, St. Louis, MO). Next, the sections were incubated with primary rat antibodies specific to laminin isoform (Manabe et al., 2008 (link)) overnight at 4°C, and then with Alexa Fluor-conjugated secondary antibodies (Life Technologies) and Hoechst 33342 stain (Wako, no. 346-07951). Stained samples were examined using LSM710 (Carl Zeiss) microscopes. Animal experimentation was approved by the animal ethics committee of Osaka University.
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9

Immunofluorescence Staining of Corneal Epithelial Cells

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Cells or cell sheets were fixed with 4% paraformaldehyde (PFA), washed three times with tris-buffered saline (TBS, TaKaRa Bio, Otsu, Japan), and incubated with TBS containing 5% donkey serum and 0.3% triton X-100 (Sigma–Aldrich, St. Louis, MO, USA) for 1 h. They were then incubated with primary antibodies (anti-VIM antibody, Abcam, ab92547, 1:200; anti-CLDN1 antibody, Life Technologies, 374900, 1:500) overnight at 4 °C and stained with Alexa Fluor®-conjugated secondary antibodies (Life Technologies) and Hoechst 33342 (Molecular Probes, Eugene, OR, USA). Stained samples were observed using an Axio Observer D1 and LSM710 (Carl Zeiss, Oberkochen, Germany). Images of three-dimensional CEC sheets were established using Zen software (Carl Zeiss).
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10

Antibody Dilution in TBS Buffer

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The antibodies used in this study are listed in Table 1. All antibodies were diluted using 1% bovine serum albumin (001-000-161; Jackson ImmunoResearch, West Grove, PA, USA) dissolved in Tris-buffered saline (TBS, 50 mM, pH 7.4; Takara Bio, Kyoto, Japan) .
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