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5 protocols using mab2055

1

Quantitative analysis of Akt and JNK signaling

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The total protein of A549 cells were harvested on following 24-hour incubation with ACPA (where maximum effect was observed) using RIPA buffer supplemented with phosphatase (cat#ab201113, Abcam) and protease (cat#78430, Thermo Scientific) inhibitors. Simple western assay was conducted following manufacturer’s guideline; 0.8 mg/ml (n = 4) of protein sample was separated on 12-230 kDa Wes Separation Module (cat#SM-W004, Protein Simple)41 (link). Nano-immunoassay was performed using primary anti-human antibodies for Akt (S473, S474, and S472) (cat#mab2055), JNK (T183/Y185 and T221/Y223) (cat#mab1387) and phospho-specific Akt (cat#mab887) and phospho-specific rabbit anti-human JNK (cat#mab1205) (all from R&D Systems). Total and phospho protein expression was assessed for Akt and JNK (Wes, Protein Simple, USA).
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2

Western Blot Analysis of EMT Markers

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The RECs were seeded into 6-well plates and treated as described earlier. The cells were lysed in radioimmunoprecipitation assay buffer containing protease inhibitors and phosphatase inhibitors. Proteins were separated by 10% SDS–polyacrylamide gel electrophoresis and transferred onto nitrocellulose membranes, which were blocked with 5% skim milk. The blots were incubated with primary antibodies against E-cadherin (1:1000; ab1416; Abcam), vimentin (1:1000; ab92547; Abcam), AKT (MAB2055; R&D Systems, MN, USA), phosphorylated (p)AKT (1:1000; ab38449; Abcam), SMAD2/3 (AF3797; R&D Systems), pSMAD2/3 (1:1000; ab63399; Abcam), SNAIL/SLUG (1:1000; ab180714; Abcam), and β-tubulin (1:2000; ab15568; Abcam). The blots were incubated with horseradish peroxidase-conjugated secondary antibodies [anti-mouse (1:10,000; Abcam) and anti-rabbit (1:10,000; Sigma-Aldrich)] and visualized using an enhanced chemiluminescent system through gel documentation with an Amersham Imager 600. In addition to conventional Western blotting, automated protein separation and immunoblotting of the Western blots were performed using a Jess system (ProteinSimple, Bio-Techne, MN, USA). The proteins were normalized following the manufacturer’s instructions to normalize sample loading variability.
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3

Quantitative Western Blot Analysis

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Whole kidney protein was extracted by using CelLytic TM MT Cell Lysis Reagent (C3228; Sigma-Aldrich, St. Louis, MO, USA). Extracts were mixed with sample buffer solution (AE-1430; ATTO, Tokyo, Japan) and heated at 95 ℃ for 5 minutes. Proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 5% BSA in Tris (hydroxymethyl) aminomethane-buffered saline (pH 7.2-7.4) containing 0.05% Tween-20 (TBS-T) for 2 hours and incubated with primary antibodies against pAkt (0.4 μg/ml) or total Akt (2 μg/ml) (MAB2055; R&D systems, Minneapolis, MN, USA) overnight at RT. Membranes were washed with TBS-T five times and incubated with HRP-conjugated goat anti-rabbit (1:2500) or goat anti-mouse (1:1000) immunoglobulin antibody for 1 hour at RT. The membranes were washed five times again, and the signals were visualized using Pierce ECL Plus western blotting substrate (170-5061; Bio-Rad Laboratories, Hercules, CA, USA) and quantified using the ChemiDoc™ MP System (170-8280J1; Bio-Rad Laboratories, Hercules, CA, USA).
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Protein Expression Analysis by Western Blot

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Cells protein lysates (Millipore) were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to 0.22 µm NC membranes (Sigma, St. Louis, MO, USA), and incubated with specific antibodies. Enhanced chemiluminescence (ECL) chromogenic substrate (Beyotime, Shanghai, China) was used to visualize the bands and the intensity of the bands were quantified by densitometry (Quantity One Software; Bio-Rad, Hercules, CA, USA). β-actin antibody (1:5,000) was used as a control, and anti-PLAC1 (1:500) (ab117528), anti-vimentin (1:2,000) (AF2105), anti-AKT (1:5,000) (MAB2055), anti-pAKT (S473) (1:2,000) (AF887) and anti-E-cadherin (1:10,000) (AF648) were purchased from R&D Systems. Donkey anti-goat IgG-HRP (1:5,000) (sc-2020) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Goat anti-mouse IgG-HRP (1:5,000) (#7076s) and goat anti-rabbit IgG-HRP (1:5,000) (7074s) were purchased from CST.
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5

Molecular Regulation of LDLR Signaling

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MK-2206 2HCl and mevastatin were from Selleckchem (Houston, Texas). Actinomycin D (Act D), cycloheximide (CHX), 25hydroxycholesterol (25-HC) and (±)-mevalonolactone (which turns to mevanolate in water) were obtained from Sigma-Aldrich (St. Louis, MO). LDLR antibodies (3839; for Western blot analysis) and (61087; for detection of cell-surface LDLR by flow cytometry) were purchased from BioVision (Milpitas, CA) and Progen (Heidelberg, Germany), respectively. Antibodies against the N-terminus of SREBP-2 (ab30682) and b-actin (ab8227) were purchased from Abcam (Cambridge, UK). Antibodies directed against the C-terminus of SREBP-2 (557037) were obtained from BD Biosciences (San Jose, CA). Anti-GAPDH (Glyceraldehyde 3-phosphate dehydrogenase; G9295) was purchased from Sigma-Aldrich. Antibodies against pAKT (S473; AF887), AKT (MAB2055), pPRAS40 (T246; MAB6890) and PRAS40 (MAB6408) were obtained from R&D Systems (Minneapolis, MN). Anti-b-tubulin (T9154-05G) was purchased from USBiological (Swampscott, MA). Anti-pAKT1 (S473; 9018) and anti-HA (ab18181) were obtained from Cell Signaling (Danvers, MA) and Abcam (Cambridge, UK), respectively.
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