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Plasmid safe atp dependent dnase kit

Manufactured by Illumina
Sourced in United States

The Plasmid-Safe ATP-Dependent DNase kit is a laboratory tool designed to selectively degrade linear double-stranded DNA while leaving circular plasmid DNA intact. The kit contains the Plasmid-Safe ATP-Dependent DNase enzyme, which requires ATP for its activity and specifically targets linear DNA molecules.

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2 protocols using plasmid safe atp dependent dnase kit

1

Circular DNA Extraction and Purification

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The purified DNA was treated with cutting endonuclease to facilitate specific digestion of linear DNA and part of mtDNA by exonuclease. The samples were incubated for 16 h at 37 °C, then the endonuclease was heat inactivated for 5 min at 80 °C. Exonuclease (Plasmid-Safe ATP-Dependent DNase kit, Epicentre) was used to digest linear single-stranded and double-stranded DNA. After removal of the above DNA, samples from the exonuclease-treated solution were confirmed to eliminate chromosomal linear DNA and mtDNA by quantitative polymerase chain reaction (qPCR) using gene COX5B and Human mt separately. The exonuclease solution was then heat inactivated for 30 min at 70 °C and the digested eccDNA was purified by magnetic beads (Agencourt AMPure XP beads).
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2

Generating Recombinant Plasmids in E. coli

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ZYCY10P3S2T Escherichia coli (System Biosciences, Palo Alto, CA, USA) were transformed with the original PPs of all four constructs (HDR-MC or HITI-MC, Cas9-AAVS1-MC, and Cas9-scrambled-MC), and viable colonies were selected using kanamycin plates. Colonies were picked 24 hours after transformation and grown in 6 ml of lysogeny broth (LB) with kanamycin for 6 hours at 37°C, followed by growth in terrific broth (TB) for 12 hours at 37°C. To induce expression of the phiC31 integrase for MC production via attB and attP recombination, 100 ml of LB broth together with 100 μl of 20% arabinose induction solution (System Biosciences, Palo Alto, CA, USA) and 4 ml of 1 N NaOH was added to the culture and grown for 5.5 hours at 30°C. An endotoxin-free maxi kit (Qiagen, Valencia, CA, USA) was used to purify both PP and MC. Following purification of the MC products, PP contamination was removed using the Plasmid Safe ATP-dependent DNase Kit (Epicentre, WI, USA), and the products were cleaned and concentrated using the Clean & Concentrator-25 Kit (Zymo Research, CA, USA).
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