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36 protocols using cell counter

1

Hypoxia and pH Effects on Cell Proliferation

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Cells treated with siRNA were seeded at 1 × 105/ml in six-well plates in triplicate and counted on an Invitrogen cell counter following trypan blue dye staining to determine the number of living and dead (blue) cells. Briefly, cells cultured for the indicated intervals under the four growth conditions (normoxia, pH 7.4; normoxia, pH 6.7; hypoxia (0.1% Oxygen), pH 7.4; hypoxia (0.1% oxygen), pH 6.7) were trypsinized and diluted in their growth media. A filtered 0.4% trypan blue dye solution was prepared and added 1:1 to count the cells with an Invitrogen cell counter. siRNA treatment was renewed after each round of cell counting (every 72 h). Proliferation experiments were repeated three times with at least two replicates for each sample. The identity of the cancer cell lines used in these studies was confirmed by STR analyses performed by the Molecular Genomics Core of the Moffitt Cancer Center.
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2

Cell Counting with Trypan Blue

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Harvested cells were resuspended in media or PBS in 0.2% Trypan Blue. Live cells were counted using countess automated Cell Counter (Invitrogen) according to the manufacturer instructions.
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3

Trypan Blue Cell Viability Assay

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Live cells were distinguished from dead cells by suspending the cells in trypan blue in PBS and counting them with an Invitrogen cell counter. These experiments were performed in triplicate.
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4

Cell Adhesion and Proliferation on Scaffolds

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MG63 cells lines (Rio de Janeiro Cell Bank, APABCAM, Rio de Janeiro, RJ, Brazil) were seeded on the scaffolds at a density of 5000 cells/cm2 and cultivated for one and three days. After each time, the samples were washed in PBS (three times) to remove non-adherent cells. Then, samples were chemically fixed in paraformaldehyde (4%) at room temperature (20 min). Afterward, an ascending series of ethanol was used to dehydrate the samples (10, 30, 50, 70, 90, and 100%). Before characterization, a thin gold layer was sputtered onto the scaffolds. Then, cells were stained using trypan blue (Sigma-Aldric) and counted using a Cell Counter (Countess®, Invitrogen). All results were expressed as mean using the total cells for each group. Cellular adhesion and proliferation were further evaluated by FE-SEM (Zeiss - EVO MA10).
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5

Bronchoalveolar Lavage Fluid Analysis

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Mice were euthanized at predetermined time points (12–24 hr), and a 20-gauge luer stub adapter was inserted into the trachea. Then, 1 ml of cold PBS without Ca++ or Mg++ was flushed through the luer adapter into the trachea and lungs and then aspirated back into the syringe. This was done a total of 3 times. Cell counts were measured using a cell counter (Invitrogen), and a differential was determined using a cytospin to pellet cells on a slide, which was then stained with hematoxylin and eosin. The supernatant from the BAL fluid was collected and analyzed for total protein using the BCA method (Pierce) as well as for macrophage inflammatory protein-2 (MIP-2) measurement using an ELISA (R&D, catalog #MM200). MIP-2 was chosen since it is an important neutrophil chemokine and correlates with neutrophil recruitment to the lung. Supernatants were stored at −80°C until analysis.
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6

Viability Assays for Cytotoxicity Evaluation

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Viability studies were performed at different times after exposure by Trypan Blue exclusion test and LDH release assay. After Trypan blue staining, cells were counted by a cell counter (Invitrogen, Monza, Italy). Viable and nonviable cells were recorded separately, and the means of three independent counts were pooled for analysis and expressed as percent of died cells with respect to total cell number. The LDH release was measured by a two steps enzymatic assay. In the first step, NAD+ is reduced to NADH/H+ by the LDH-catalyzed conversion of lactate to pyruvate; in the second step, the catalyst (diaphorase) transfers H/H+ from NADH/H+ to tetrazolium salt which is reduced to formazan. The amounts of LDH in the culture medium were determined and calculated according to kit instructions (EuroClone Milan, Italy). Prior to each assay, the cells were lysed with 2% (V/V) Triton X-100 in culture media for 30 min at 37°C to obtain a representative maximal LDH release as the positive control with 100% toxicity All tests were performed in triplicate and assay was repeated three times independently with similar results.
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7

Quantifying Metabolic Activity in MCF7 Cells

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MCF7 cells were seeded on 24-well plates. The cells were washed twice with culture medium, and fresh culture medium was added. Twelve hours later, the cell culture medium was collected and frozen at −80 °C, and the number of cells in each well was counted using a cell counter (Invitrogen). The glucose concentration in the collected cell culture medium were determined by using the glucose assay kit (Applygen, Beijing, China), the lactate concentration were determined by the lactate assay kit (Kinghawk, Beijing, China) according to the manufacturer’s protocol.
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8

Trypan Blue Assay for VSMC Toxicity

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The toxicity of PAE on VSMCs was determined by the trypan blue exclusion test. After 12, 24 and 48 h incubation with PAE of different concentrations (50, 100, 200 µM), the VSMCs were removed from culture and the cells that excluded 0.4% trypan blue (37°C for 3 min) were counted in an automated Cell Counter (Invitrogen; Thermo Fisher Scientific, Inc.); 3 slides were counted in each group, with 3 fields of view from each.
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9

Apoptosis and Viability of MC3T3-E1 Cells

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The Annexin V-FITC cell apoptosis detection kit (Beyotime Biotechnology, Shanghai, China) was used to detect cell apoptosis. The MC3T3-E1 cells were incubated with or without DEX and various concentrations of VK2 (10−5, 10−6 and 10−7 M) for 6 days, collected, resuspended in 200 µl of Annexin V-FITC and 10 µl of propidium iodide, and incubated for 20 min at room temperature. Subsequently, flow cytometry was used to evaluate the number of apoptotic cells. The early apoptotic cells are labeled green and the dead and late apoptotic cells are labeled red, while the live cells are not stained.
trypan blue staining was performed to evaluate cell viability. The MC3T3-E1 cells were treated with both DEX and various concentrations of VK2 (10−5, 10−6 and 10−7 M) in FBS-free medium for 6 days and then collected. Ten microliters of trypan blue (Invitrogen, Carlsbad, CA, USA) were mixed with 10 µl of the cell suspension, and 10 µl of the mixture were then added to the cell counting plate. The cell death rates were automatically calculated with a cell counter (Invitrogen). A ReadyProbes® Cell Viability Imaging kit (Life Technologies, Gaithersburg, MD, USA) was also used to detect cell viability at 6 days after the MC3T3-E1 cells were incubated under the different conditions. The blue dye stained all living cells, and the green dye stained the dead cells.
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10

Cell Seeding and Quantification Protocol

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The coated and uncoated specimens were placed into 24-well plates with 800 µL of fresh medium in order to just cover the surface of the specimen. Then, the hMSC cells at a cell density of 5 × 104 were carefully seeded on top of the specimens and incubated for 6 h. After the incubation period, the medium was removed, cells were trypsinized, and the total cell number was recorded using an automated Invitrogen cell counter (Invitrogen, Waltham, MA, USA). The cells seeded without specimens were considered as control.
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