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Shrna nc

Manufactured by GenePharma
Sourced in China

ShRNA-NC is a negative control short hairpin RNA product offered by GenePharma. It is designed to be used as a reference for evaluating the effects of other short hairpin RNA molecules in experimental settings. The core function of ShRNA-NC is to serve as a control in knockdown experiments, providing a baseline for comparison.

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79 protocols using shrna nc

1

Silencing Rat Norepinephrine Transporter

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Since there is no published shRNA sequence that can effectively silence rat NET, we designed and screened the shRNA that can effectively silence the gene. First, the full length of mRNA sequence of SLC6A2 gene of rat was found in NCBI Genebank, and then according to the basic principle of designing shRNA as a template35 (link), we obtained 4 target sequences of ShRNA-629, 330, 1222 and 1146, which were designed using the Ambion application (Ambion, Austin, TX, USA). Meanwhile, lentivirus expressing shRNA against NET, which were constructed of transfer vector [LV3 (H1/GFP/PURO)] and three helper vectors (pGag/Pol, pRev and pVSV-G), together with nonsense shRNA as negative control (shRNA-NC) were purchased from GenePharma (GenePharma, Shanghai, China)
The shRNA sequences were depicted as below:
ShRNA-629: 5′-GGCGACCATACCAAATACTCC-3′;
ShRNA-330: 5′-CATATACACTGTTCCTCATCA-3′;
ShRNA-1222: 5′-CATTTCTACTCTGTCGGGATC-3′;
ShRNA-1146: 5′-CCCATGAACATAAAGTCAAG-3′;
shRNA-NC: 5′-TTCTCCGAACGTGTCACGTTTC-3′.
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2

Investigate Circ-Snrk's Role in IRI-Induced AKI

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All experimental procedures were conducted in accordance with the Guide for the Care and Use of Laboratory Animals, with approval of the Ethics Committee of Guangzhou Forevergen Medical Laboratory Animal Center (Guangdong, China). Six Sprague-Dawley rats aged 6–8 weeks (200–250 g) were divided into two groups randomly using a random number table: The sham group and the AKI group. The IRI-induced AKI animal model was constructed by following the protocol of our previous study [18 (link)]. In brief, ischemia was induced by blocking the left renal vertebral arch and arteries for 45 min, and the removal of the right kidney. After 48 h of reperfusion, blood and left kidney tissue were collected for further study.
To investigate whether circ-Snrk had an effect on the IRI-induced AKI animal model, the lentivirus target for circ-Snrk (shRNA), as well as the negative control lentivirus (shRNA-NC), were purchased from Genepharma (Shanghai, China), Then another 15 Sprague-Dawley rats were used for this experiment and randomly divided into three groups (five rats per group): sham group, AKI + shRNA NC group, and AKI + shRNA group. For AKI + shRNA NC group and AKI + shRNA group, lentivirus was injected into tail vein with 1 × 109TU following with previous study [19 ].
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3

Lentiviral-Mediated MEG3 Modulation in Cervical Cancer

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A lentiviral vector carrying MEG3 (MEG3 group) and its control lentiviral vector (vector group), as well as a lentiviral vector carrying MEG3-specific short-hairpin RNA (shRNA; MEG3 shRNA group) and its control lentiviral vector (NC shRNA group) were purchased from Shanghai GenePharma Co. Ltd. Cell transfection was performed according to the lentiviral protocol. Siha or HeLa cells in logarithmic growth phase were seeded into 12-well plates at a density of 0.5 × 105 cells/well, and 40% confluent cells were transfected with different groups of lentiviral vectors. After screening with puromycin (1 μg/mL), cervical cancer cells stably expressing high or low level of MEG3 were obtained.
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4

Silencing DJ-1 in Pancreatic Cancer Cells

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DJ-1 shRNA and NC shRNA, a scrambled sequence of the shRNA target sequence containing the green fluorescent protein expression sequence, were purchased from GenePharma (Shanghai, China). DJ-1-specific siRNA was also purchased from GenePharma. The target sequences of DJ-1 shRNA and DJ-1 siRNA were 5′-GCTCTGTTGGCTCATGAAATA-3′ and 5′-GAAUUUAUCUGAGUCUGCUUU-3′, respectively. PANC-1 cells were transfected with the recommended concentration of siRNA using Lipofectamine 2000 (Thermo Fisher Scientific, Waltham, MA, USA), followed by one change of medium according to the manufacturer’s instructions. After 48–72 h of siRNA transfection, cells were harvested for the following assay. Stable shRNA knockdown cells (BxPC-3/NC shRNA and BxPC-3/DJ-1 shRNA) were established as previously described.6 (link)
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5

Cardiac Tissue Isolation and Culture

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All experimental procedures were approved by the Ethics Committee of the Second Hospital of Hebei Medical University. Cardiac tissues were acquired from 1 to 3 day old newborn C57BL/6J mice and the primary cardiomyocytes were obtained as previously described.30 When cardiomyocytes had been confirmed to reach 80% of confluence, they were randomized into experimental groups as follows: 5.5 mmol/L D‐glucose as the normal glucose (NG) group, osmolarity control (OSM) group containing 5.5 mmol/L D‐glucose plus 24.5 mmol/L mannitol and 30 mmol/L D‐glucose as the high glucose (HG) group. The myocytes were further incubated for 48 h in the presence or absence of MALAT1‐shRNA, NC‐shRNA (Genepharma) miR‐185‐5p mimics and miR‐185‐5p inhibitor as well as 100 μmol/L fasudil, a ROCK inhibitor, (Hongri). The concentration of fasudil 100 μmol/L was chosen according to our previous study.20 Cell transfection were performed using Lipofectamine™ 2000 (Invitrogen) according to the manufacturer's instructions.
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6

Silencing PTK7 and Overexpressing DVL3 in SCC-9 Cells

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Short hairpin (sh) RNAs targeting PTK7 (sh-PTK7-1 and sh-PTK7-2) were used to silence PTK7 expression, and a scrambled shRNA was used as a negative control (NC) shRNA. Overexpression plasmids for DVL3 (pcDNA 3.1-DVL3) were synthesized to overexpress DVL3, and pcDNA 3.1 empty vector was used as a NC. sh-PTK7-1 (1 µg), sh-PTK7-2 (1 µg), NC shRNA (1 µg), pcDNA-DVL3 (50 nM) and pcDNA (50 nM) were all designed by Shanghai GenePharma Co., Ltd. SCC-9 cells were seeded into 6-well plates (1x106/well), and then transfection was performed for 8 h at 37˚C using Lipofectamine® 3000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. Cells were maintained under normal culture conditions and were harvested for analysis 72 h after transfection.
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7

Transient Transfection of miRNA Modulators

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All the miRNA inhibitors, miRNA mimics, nonsense sequence as miRNA negative control (NC), short hairpin RNA of Livin (sh-Livin) and short hairpin RNA negative control (NC-shRNA) were chemically synthesized by GenePharma (Shanghai, China). All of the transfections in the present study were transient, using JetPRIME reagent (PolyPlus Transfections SA, Illkirch, France) according to the manufacturers protocol. The cells were not harvested for the subsequent assays until 48 h after RNA oligonucleotide transfection.
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8

Nrf2 Knockdown via shRNA Transfection

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Cells were transfected with negative control-short hairpin RNA (NC-shRNA) or Nrf2-shRNA (GenePharma, Shanghai, China) via cell transfection reagent (Obio Technology, Shanghai, China). Procedures were conducted by a standard protocol based on the manufacturer’s instructions.
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9

Downregulating SLC6A14 and Overexpressing NLRP3

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To downregulate SLC6A14, shRNA sequences targeting SLC6A14 and the negative control (NC) shRNA were obtained from GenePharma (Shanghai, China). Additionally, the NLRP3 overexpression plasmid pcDNA4.0-NLRP3 and the empty pcDNA4.0 plasmid were procured from Synbio Technologies Co. Ltd.™ (Suzhou, China). Cells were grown to 70% confluence and transfected with the plasmids using Lipofectamine 2000 (Thermo Fisher Scientific, United States) according to the provided directions. RNA was isolated after 48 h, and protein was isolated after 72 h.
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10

Silencing DEC1 Expression in Ovarian Cancer Cells

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Short hairpin (sh)RNA targeting DEC1 (shEDC1) and its negative control (NC shRNA) were synthesized by Shanghai GenePharma Co., Ltd., and subsequently inserted into pSuper plasmid (Shanghai GenePharma Co., Ltd.) using DNA recombination technology. shEDC1 or NC (100 ng) was transfected in SKOV3 and OVCAR3 cells using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. Transfected cells were cultured for 48 h, then the subsequent functional experiments were performed.
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