The largest database of trusted experimental protocols

29 protocols using r software version 4

1

Survival Analysis of Prognostic Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Statistical analyses were applied with R software version 4.0.2 and SPSS software version 22.0 (IBM, SPSS Statistics, Chicago, IL, USA). Numerical data were expressed as mean ± standard deviation or median for quantitative variables analyzed using one-way ANOVA. Continuous variables were first transformed into categorical data, and categories were described as frequencies and percentage and then compared with Chi-square test. With univariate and multivariate Cox proportional hazards regression analyses, independent prognostic factors were identified. In addition, survival curves were depicted by the Kaplan-Meier method and compared by the log-rank test to identify the hazard ratio (HR) and their 95% confidence interval (95% CI). HR >1 indicates that prognostic factors are associated with decreased survival rate (20 (link),21 (link)). The P value <0.05 was confirmed as statistical significance.
+ Open protocol
+ Expand
2

Statistical Analysis of Cardiometabolic Biomarkers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Within-group changes were assessed using Wilcoxon signed-rank tests. Between-group comparisons were performed using the Kruskal-Wallis test or Pearson’s chi-squared test. Pairwise comparisons were conducted using the Wilcoxon rank-sum test when the Kruskal-Wallis test was significant. Spearman’s rank correlations were used to assess relationships between changes in independent variables and cardiometabolic biomarkers. In the tables, continuous variables are presented as mean and standard deviation and categorical variables are presented as frequency and proportion. Statistical analyses were performed with a type I error rate of 5% using SPSS version 28.0 (IBM, Montauk, New York) and R software version 4.0.2. (R Foundation for Statistical Computing, Vienna, Austria).
+ Open protocol
+ Expand
3

Statistical Analysis Methods for Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
Statistical analysis was performed using R software version 4.0.2 or SPSS version 25.0 (IBM Corp., Armonk, NY, USA). Two‐tailed Student's t‐test and Mann–Whitney U test were performed to compare the differences in normally distributed and non‐normally distributed continuous variables between the two groups, respectively. Kruskal–Wallis (non‐parametric) and one‐way ANOVA tests (parametric methods) were used for comparisons of more than two groups. We used chi‐squared and Fisher's exact tests to analyze the difference between categorical variables. The Pearson's correlation test and Spearman's rank correlation test were used to evaluate correlations between continuous variables when appropriate. For survival analysis, the Cox regression hazard model and Kaplan–Meier method with the log‐rank test were used where necessary. The best cutoff values for each continuous prognostic marker were calculated using the Survminer package. All P‐values were two‐tailed, and statistical significance was set at P < 0.05, unless otherwise noted.
+ Open protocol
+ Expand
4

Statistical Analysis Protocols for Biomedical Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Student's t-test was employed to assess disparities in normally distributed continuous variables between the two groups. When comparing differences between continuous variables that are not normally distributed, the Mann–Whitney U test was utilized instead. Chi-square and Fisher's exact tests were used to estimate the statistical significance of the differences between categorical variables. The correlations between continuous variables that were normally distributed and those that were not normally distributed were examined using Pearson and Spearman correlation tests, respectively. Survival curves were determined using the Kaplan–Meier algorithm and compared using the log-rank test. Hazard ratios for clinical variables were calculated through the execution of univariate and multivariate Cox regression analyses. All statistical analyses were conducted utilizing R software version 4.0.2 or SPSS version 25.0 (IBM Corp., Armonk, N.Y., USA). Two-sided statistical tests were conducted to test for significance, and the level of significance was set at P value less than 0.05.
+ Open protocol
+ Expand
5

Propensity Score Matching in Immunotherapy

Check if the same lab product or an alternative is used in the 5 most similar protocols
SPSS 25.0 software (IBM Corp.) and R software version 4.1.1 were both used to update all statistical analyses. Continuous variables were presented as medians (ranges) and assessed through the Mann–Whitney U test. Categorical variables were expressed as percentages and applied for the chi‐squared test. Few PD‐L1‐negative patients are currently treated with immunotherapy, and to minimize the potential confounding effect and to derive well‐matched cohorts, a 1:2 propensity score matching (PSM) approach was used to match different patients who underwent chemotherapy combined with anti‐vascular therapy with patients who underwent chemotherapy combined with immunotherapy. A non‐replacement nearest neighbor matching algorithm was used to ensure a suitable match. Life curves were calculated by the Kaplan–Meier method and measured using the log‐rank test. A p‐value <0.05 in a two‐tailed test was considered a statistically notable difference.
+ Open protocol
+ Expand
6

Evaluating Surgical and Bracing Outcomes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Statistical analysis was performed by a biostatistician (K. H., with 16 years of experience) using SPSS software version 25.0 (IBM Corp., Armonk, NY, USA) and R software version 4.1.1 (https://www.R-project.org/, Vienna, Austria). The normal distribution of the data was confirmed by the Shapiro–Wilk test. To compare the clinical and radiologic features of the surgery and brace groups, the t-test was used for continuous variables, while the chi-square test was used for categorical variables. The linear mixed model was used to analyze the stiffness of the paraspinal muscles between the surgery and brace groups according to time. Using this model, we considered repeated measurements by incorporating patients as random effects. The fixed effects included treatment (bracing or surgery), time (0, 6, and 12 months), and measurement side (concave or convex). The model incorporated interactions between two factors and three-way interactions between three factors in terms of treatment, time, and measurement side. Means and 95% confidence intervals (CIs) were estimated based on the model with the least square method. P values less than 0.05 were considered statistically significant.
+ Open protocol
+ Expand
7

Prognostic Factors of Patient Survival

Check if the same lab product or an alternative is used in the 5 most similar protocols
Means and standard deviations were used to describe continuous variables such as age. Chi-square or non-parametric U tests were used for comparison between groups. Other classifications were described by frequency (%), and the differences between the groups were compared using the chi-square test. The Cox regression model analyzed the patient prognostic factors, and the patient survival differences were analyzed by the log-rank test and the K-M curve. Statistical analyses were performed using the R software version 4.1.0 and SPSS26.0.The R package includes "survival,” “ggDCA,” “DynNom,” and “RMS” P values < 0.05 were considered statistically significant.
+ Open protocol
+ Expand
8

Survival Analysis of Prostate Cancer Patients

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mean and standard deviation were used to describe continuous variables (age), and frequency (%) was used to describe other categorical variables (race, marriage, tumor grade, TNM stage, PSA, GS, RT and chemotherapy).Differences between groups were compared using chi-square or non-parametric U-test. The patient prognostic factors were analyzed by the Cox regression model, and the patient survival differences were analyzed by the log-rank test and the K–M curve. Statistical analyses were performed using R software version 4.1.0 and SPSS26.0. The R package includes "survival", "matching", "ggDCA", "DynNom", and "RMS". P values less than 0.05 were considered statistically significant.
+ Open protocol
+ Expand
9

Prognostic Factors in Cancer Survival

Check if the same lab product or an alternative is used in the 5 most similar protocols
Continuous variables like age were described using the mean and the standard deviation. Group comparisons were made using the chi-square test or non-parametric U test. Categorical variables such as tumor size, stage, and surgical method were described by frequency and compared using the chi-square test. A Cox regression model analyzed prognostic influencing factors of the patients, and the log-rank test tested the patient survival differences. Statistical analysis was performed using the R software version 4.1.0 and SPSS 26.0. The R packages used included "DynNom", "RMS", "Survival", and "ggDCA". p values less than 0.05 were considered statistically significant.
+ Open protocol
+ Expand
10

Survival Analysis of Patient Prognosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Continuous variables(age) were tested for normal distribution and conform to the normal distribution, described by the mean ± standard deviation. Chi-square or non-parametric U tests were used for comparison between groups. Other categorical variables were described by frequency (%), and the groups were compared using the chi-square test. The Cox regression models analyzed patient prognostic factors, and the log-rank test and K-M curves analyzed the survival differences of patients. All statistical methods were performed using R software version 4.1.0 and SPSS26.0. The R packages including “DynNom”, “RMS”, “Survival”, and “ggDCA” were used. A P value less than 0.05 was considered statistically significant.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!