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12 protocols using β propiolactone

1

Synthesis and Characterization of Functionalized Polymers

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Di-tert-butyl dicarbonate, triethylamine, N, N-Dimethylethylenediamine, β-Propiolactone, tert-butyl bromoacetate, barium chloride, magnesium sulfate, magnesium chloride hexahydrate, phosphate-buffered saline (PBS; pH 7.4, 10 mM, 138 mM NaCl, 2.7 mM KCl), HEPES buffer, diethyl ether, ethyl alcohol, acetonitrile and dichloromethane (DCM) were obtained from Sigma-Aldrich. 2-chloro-4, 6-dimethoxy-1, 3, 5-triazine (CDMT), N-methylmorpholine (NMM), 1, 3-propanesultone and trifluoroacetic acid (TFA) were purchased from the Alfa Aesar. All the sodium alginates including VLVG (>60% G, 25 kDa MW), SLG20 (>60% G, 75–220 kDa MW), and SLG100 (>60% G, 200–300 kDa MW), were purchased from FMC BioPolymer Co. (Philadelphia, PA). Cyano-functionalized silica was purchased from SiliCycle. Rabbit anti-insulin antibodies (Cat. #ab63820) was purchased from Abcam, and Alexa Fluor 594-conjuaged donkey anti-rabbit igG (Cat. #A-21207) was purchased from Invitrogen. α-smooth muscle actin (SMA) (Cat. #C6198) was purchased from Sigma-Aldrich, and anti-mouse CD68 (Cat. #137012) was purchased from BioLegend. Anti-mouse F4/80 (Cat. MF48000) was purchased from ThermoFisher, and anti-CD11b (Cat. #ab133357) was purchased from Abcam. Anti-mouse Ly-6G/Ly-6C (Cat. #108419) was purchased from BioLegend. Proteome profiler array kit (Mouse Cytokine Array Panel A; Cat. #ARY006) was purchased from R&D Systems.
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2

Influenza Virus Characterization and Manipulation

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Viruses used in this study include: pH1N1 viruses wt CA/09, CA/09-X179A, a high growth reassortant of CA/09 that has NA sequence identical to that of the wt parent virus, and a drug-resistant H1N1 virus A/Bethesda/NIH107-D31/2009; seasonal H1N1 virus BR/07; an attenuated H5N1 VN/04 virus (ΔVN/04) that contains the HA and NA genes of VN/04 (polybasic residues in the cleavage motif of HA deleted) and the internal genes of A/Puerto Rico/8/1934; reassortant H6N1 viruses H6N1CA/09, H6N1BR/07, H6N1VN/04 and H6N1BA/12, viruses that contain the HA gene of H6N2 virus A/Turkey/Massachusetts/3740/1965 and the NA gene of CA/09, BR/07, VN/04 or BA/12; H6N1CA/09 viruses, which contain N369K or D451G single mutation in the NA. Primers used to clone and sequence NA genes are listed in Supplementary Table 4. Viruses were grown in 10-day-old embryonated chicken eggs and, if necessary, were inactivated with β-propiolactone (Sigma-Aldrich) and purified by sucrose gradient centrifugation.
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3

Vaccine Production from Influenza Virus Infection

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To generate vaccine, MDCK cells were infected with a seed stock maH1N1 at an MOI of 0.01 TCID50 per cell in infection media. Approximately 72 hours post infection, the supernatant fluids were collected, clarified by centrifugation (500 g for 10 minutes), and inactivated with the addition of 0.05% β-propiolactone (Sigma #P5648) for 24 hours followed by a 2-hour 37℃ incubation. Inactivated virus was purified by ultracentrifugation in a Beckman 186 SW28TU rotor at 25,000rpm for 1 hour at 4℃ with a 20% sucrose gradient and the virus pellet was resuspended in phosphate buffered saline with calcium and magnesium (PBS+; Gibco #14040–133). The concentration of viral protein was measured using the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific #23225). To generate viral protein for Enzyme-Linked Immunosorbent Assays (ELISA), the above protocol was followed using maH1N1 and maH3N2 seed stocks, except without chemical or heat inactivation steps.
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4

Inactivation and Concentration of CHIKV and ZIKA Virus

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Vero cells were obtained from the American Type Culture Collection (ATCC) and cultured in Dulbecco Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum (FBS) (Thermo Fisher Scientific) and 1% penicillin and streptomycin at 5% CO2, 37 ℃. Chikungunya/human/China/GD134/2010 (GenBank Accession: HQ846359) was isolated from the serum of an infected female patient at Guangdong Provincial Center for Disease Control and Prevention. Zika/human/China/GD01/2016 (GenBank Accession: KU740184) was isolated from Guangdong inbound passengers. All experiments involving the CHIKV and ZIKA authentic virus were conducted in biosafety level 2 or higher laboratories. Virus virions were inactivated using β-propiolactone (Sigma-Aldrich) with a concentration of 1:2000 at 4 ℃ for 24 h. Complete inactivation of the virus was confirmed by the lack of replication in a Vero infection experiment. Supernatants containing virus particles were concentrated using PEG-it (SBI Biosciences) overnight at 4 °C and resuspended in phosphate-buffered solution (PBS, pH7.4) for further use.
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5

Swine Influenza Vaccine Preparation

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Swine influenza vaccine strains (CA09, MN21, and GA19 viruses) grown in MDCK cells were inactivated by β-propiolactone (Sigma-Aldrich, St. Luis, MO) treatment as previously described (27 (link)). Sufficient virus inactivation was demonstrated by failure of virus replication in two-serial passages in MDCK cells (28 (link)). Following inactivation, vaccine preparations were formulated with a commercial mineral oil-in-water (O/W) emulsion (Montanide™ ISA 15 VG), which served as the adjuvant solution. WIV vaccine formulations were mixed at a volume-to-volume ratio of 85:15 virus suspension to adjuvant, prepared under a low shear rate, and stored at 4°C according to the manufacturer’s instructions, 1 day prior to each vaccination. Monovalent vaccine formulations (CA09, MN21, and GA19) contained prior to adjuvant addition approximately 128 hemagglutination units (HAU)/mL of WIV while bivalent vaccine formulations (CA09-MN21) contained approximately 256 HAU/mL (128 HAU of each WIV). In assessing the HAU of the vaccine virus stocks, we conducted a hemagglutination assay for each virus, as previously described (29 (link)). After calculating the HA units within the stock, a subsequent dilution was performed, to achieve a final HA concentration of either 128 or 256 HA units/mL.
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6

Influenza Virus Inactivation Protocols

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Influenza A virus, A/Puerto Rico/8/1934 (PR8), subtype H1N1, and Influenza B virus, B/Lee/1940 (B/Lee) were grown, harvested, titered, and plaqued from isolates as described previously31 (link),32 . One hemagglutinating unit (HAU) of live PR8 virus ≈1.5 ×105 plaque forming units, titered as previously described32 . Viruses were inactivated using either β-propiolactone33 (link) (BPL; Sigma) or UV light34 (link). In the BPL protocol, allantoic fluid containing virus was buffered in HEPES (0.1 M) and treated with BPL (0.1%) at 4 °C overnight. The next day, the prep was incubated at 37 °C for two hours to inactivate BPL. Hemagglutinin activity was determined by HAU titer using chicken red blood cells35 (link). Heat inactivation of NA and measurement of NA activity using 4-MUNANA (Sigma) were as previously described36 (link). The following reagents were obtained through the NIH Biodefense and Emerging Infections Research Resources Repository, NIAID, NIH: Influenza A Virus, A/Brisbane/59/2007 (H1N1), NR-12282; Fluzone® Influenza Virus Vaccine, 2006–2007 Formula, NR-10483; Fluzone® Influenza Virus Vaccine, 2008–2009 Formula, NR-17423.
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7

Reverse Genetics of Reassortant H6N2 Viruses

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Viruses used in this study included reassortant H6N2 viruses that contain the HA gene of A/turkey/Massachusetts/3740/1965 (H6N2) and the NA gene of seasonal A(H3N2) viruses A/Wuhan/359/1995 (WH/95), A/Panama/2007/1999 (PA/99), A/Wisconsin/67/2005 (WI/05), A/Victoria/361/2011 (VIC/11), A/Texas/50/2012 (TX/12), A/Switzerland/9715293/2013 (SWZ/13), A/Hong Kong/4801/2014 (HK/14), A/Singapore/INFIMH-16–0019/2016 (SGP/16), A/Mie/26/2016 (MIE/16), A/Louisiana/32/2017 (LA/17), or A(H3N2)v virus A/Minnesota/11/2010 (MN/10). These viruses were rescued with reverse genetics34 (link) and amino acid mutations were introduced into HK/14 and SGP/16 NAs with a QuikChange multisite-directed mutagenesis kit (Stratagene, La Jolla, CA, USA). Viruses were propagated in 9- to 11-day-old specific pathogen–free embryonated chicken eggs and titrated in Madin-Darby canine kidney (MDCK) cells, and those for ELISA were inactivated with β-propiolactone (Sigma-Aldrich, St. Louis, MO, USA) and purified by sucrose gradient centrifugation.
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8

Benzonase® Assisted Depth Filtration

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Benzonase® (Sigma, St. Louis, MO, USA) was added to the bioreactor at 10 units/mL and incubated for 1 h before the clarification step. Depth filtration was evaluated as an alternative to the commonly used centrifugation as a cell removing step. From each harvest, 1 L of the harvested material after Benzonase® treatment was centrifuged at 4000× g for 10 min and another 1 L was filtered through MilliStack D0HC® (Millipore, Rockville, MD, USA) depth filter at 7.66 mL/min in sterile conditions as previously described [28 (link),29 (link)]. Before filtration, the depth filter was equilibrated with the filter buffer (50 mM HEPES, 300 mM NaCl at pH 7.2). The clarified material was supplemented with HEPES (Sigma, St. Louis, MO, USA) to a final concentration of 70 mM to maintain the pH at 7.2 during the inactivation. The material was inactivated by adding 0.1% (v/v) β-propiolactone (Sigma, St. Louis, MO, USA) and then stirred for 24 h at 4 °C. The inactivated supernatant was frozen at −80 °C and was thawed upon loading to the AKTATM Avant 25 system (Cytiva, Marlborough, MA, USA) for evaluation of the ion exchange chromatography membranes.
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9

Influenza Virus Inactivation Protocols

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Influenza A virus, A/Puerto Rico/8/1934 (PR8), subtype H1N1, and Influenza B virus, B/Lee/1940 (B/Lee) were grown, harvested, titered, and plaqued from isolates as described previously31 (link),32 . One hemagglutinating unit (HAU) of live PR8 virus ≈1.5 ×105 plaque forming units, titered as previously described32 . Viruses were inactivated using either β-propiolactone33 (link) (BPL; Sigma) or UV light34 (link). In the BPL protocol, allantoic fluid containing virus was buffered in HEPES (0.1 M) and treated with BPL (0.1%) at 4 °C overnight. The next day, the prep was incubated at 37 °C for two hours to inactivate BPL. Hemagglutinin activity was determined by HAU titer using chicken red blood cells35 (link). Heat inactivation of NA and measurement of NA activity using 4-MUNANA (Sigma) were as previously described36 (link). The following reagents were obtained through the NIH Biodefense and Emerging Infections Research Resources Repository, NIAID, NIH: Influenza A Virus, A/Brisbane/59/2007 (H1N1), NR-12282; Fluzone® Influenza Virus Vaccine, 2006–2007 Formula, NR-10483; Fluzone® Influenza Virus Vaccine, 2008–2009 Formula, NR-17423.
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10

Inactivation of West Nile Virus

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Stocks of WNV (NY-2000, 2×104 PFU/ml) were incubated in 0.1% (vol/vol) β-propiolactone (Sigma) for 30 min at 4ºC. BPL in viral stocks was then inactivated by incubating the stocks for 2 h at 37ºC, followed by hydrolysis of BPL via subsequent overnight incubation at 4ºC. Alternatively, similar stocks were placed in 35-mm2 culture plates and incubated in a dark chamber above a UV transilluminator box (Stratagene) for 2 h at RT. Inactivated viral stocks were stored at −80ºC.
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