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31 protocols using nci h1975

1

POLR1B Expression in NSCLC Cell Lines

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The human 293T cell line and lung cancer cell lines A549, NCI-H1299, NCI-H1975 and NCI-H460 were purchased from the Cell Bank of the Type Culture Collection. The A549 cells were maintained in F-12K medium (Invitrogen; Thermo Fisher Scientific, Inc.) and the NCI-H1299, NCI-H1975 and NCI-H460 cells were cultured in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.). The human 293T cells were maintained in DMEM high glucose medium (Gibco; Thermo Fisher Scientific, Inc.). All media were supplemented with 10% fetal bovine serum (FBS), 100 U/ml streptomycin and penicillin (all from Gibco; Thermo Fisher Scientific, Inc.). The present study detected the expression levels of POLR1B in four NSCLC cell lines. The results revealed that POLR1B was highly expressed in all NSCLC cell lines. Despite the expression of POLR1B in NCI-H1975 cells being higher than other cell lines, however, the differences were not significant. A549 cell line was one of the most widely used NSCLC cell line in lung cancer biology research and selected for further study.
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2

Cell Line Cultivation for NSCLC Research

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The human NSCLC cell lines NCI-H1650, PC9, NCI-H1299, NCI-H827, NCI-H520, A549, NCI-H1975, PC14, NCI-H466, NCI-H2170 and NCI-H460 and human umbilical vein endothelial cells (HUVECs) were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). The human NSCLC cell lines NCI-H1650, NCI-H1299, NCI-H827, NCI-H520, A549, NCI-H1975, PC14, NCI-H466, NCI-H2170 and NCI-H460 were maintained in 1640 medium supplemented with 10% fetal bovine serum (FBS, Gibco) and 1% penicillin/streptomycin (Gibco). The PC9 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% FBS and 1% penicillin/streptomycin (Gibco). The HUVECs were incubated with Ham’s F-12 K supplemented with 100 μg/ml heparin (Sigma), 50 μg/ml endothelial cell growth supplement (BD Biosciences), 10% FBS (Gibco) and 1% penicillin/streptomycin (Gibco).
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3

Cell Culture of Lung Cancer and Normal Cells

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Human embryonic kidney cell HEK293, human non-small-cell lung cancer NCI-H1993, and NCI-H1975 cells were purchased from the American Type Culture Collection (Manassas, VA, USA). Human normal lung fibroblast MRC-5 cells and human non-small-cell lung cancer A549 cells were purchased from the Korean Cell Line Bank (Seoul, Korea). Human non-small-cell lung cancer PC-9 cells were provided by Drs. Jin Kyung Rho and Jae Cheol Lee (Asan Medical Center, Seoul, Korea). The A549, PC9, NCI-H1993, and NCI-H1975 cells were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum (10% FBS, Gibco, Grand Island, NY, USA) and antibiotics-antimycotics (100 units/mL penicillin G sodium, 100 μg/mL streptomycin, and 250 ng/mL amphotericin B). MRC-5 and HEK293 cells were cultured in DMEM medium supplemented with 10% FBS and antibiotics-antimycotics. Cells were incubated at 37 °C with 5% CO2 in a humidified atmosphere.
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4

Lung Cancer Tissue and Cell Line Sourcing

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This research was approved by the Ethics Committee of The Fourth Hospital of Hebei Medical University. Five pairs of lung cancer tissues and adjacent tissues were derived from patients in the Fourth Hospital of Hebei Medical University with signed informed consent. The tissue samples were preserved at −80°C until subsequent detection. Lung cell lines A549, SK-MES-1, NCI-H1437, and NCI-H1975 were purchased from Procell Life Science&Technology Co., Ltd (Wuhan, China), and NCI-H2170 was purchased from Zhongqiaoxinzhou Biotech Co., Ltd (Shanghai, China). A549 was cultured in Ham’s F-12 K (PM150910, Procell Life Science) with 10% fetal bovine serum (FBS; SH30084.03, Hyclone, USA), while SK-MES-1 was maintained in MEM (41,500–067, Gibco, USA) with 10% FBS. NCI-H1437, NCI-H2170, and NCI-H1975 were grown in RPMI1640 (31,800–014, Gibco) with 10% FBS. All cells were cultured in an incubator (HF-90, Shanghai Lishen, China) of 95% humidity, 5% CO2 at 37°C.
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5

Establishing Stable Lung Cancer Cell Lines

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In this study, all human lung cancer cell lines A549, NCI-H1975, NCI-H292 cells, and the Human Embryonic Kidney 293T cells were purchased from the American Type Culture Collection (ATCC) and were cultured according to the instructions. HEK293T, HEK293T, A-549, and NCI-H292 were cultured using DMEM medium (Gibco, USA) supplemented with 10% fetal bovine serum (Excell), NCI-H1975 cells were cultured with RPMI-1640 (Gibco, USA) supplemented with 10% fetal bovine serum. All cells were maintained at 37°C and 5% CO2 incubator. To establish stable tumor cells, lentiviruses carrying shRNAs (2 μg DNA) were used to infect the cells in RPMI-1640 (Gibco) supplemented with 10% fetal bovine serum, followed by the standard procedure for Lipofectamine 3000 Transfection Reagent (Thermo Fisher, NY, USA). Finally, the stable cells were selected by 0.5 μg/ml puromycin. For HA-tagged CTSV plasmid construction, 0.5 and 1 μg CTSV plasmid were used and transfected as previously. The knockdown sequence of CTSV is shown as follows: shCTSV#1: TTCCAAAATTTGACCAAAATTTG, shCTSV#3: TCCAAAATTTGACCAAAATTTGG.
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6

Lung Adenocarcinoma Tissue and Cell Line Protocol

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This study includes five pairs of lung adenocarcinoma (LUAD) tissues from Space Central Hospital. The ethical approval for this study was from Space Central Hospital (20,200,511-JJJHZ-01). Written informed consents were obtained from each patient. Four NSCLC cell lines (A549, NCI-H1299, HCC827, and NCI-H1975) and human bronchial epithelial cell line HBEC were obtained from Procell Life Science&Technology Co.,Ltd (Wuhan, China). A549 cells were cultured in DMEM (High glucose, Gibco, Grand Island, NY, USA, 11,965–092) with 10% FBS (Gibco) and 1% penicillin/streptomycin (P/S, Procell). NCI-H1299, HCC827, and NCI-H1975 cells were cultured in RPMI-1640 medium (Gibco) with 10% FBS (Gibco) and 1% penicillin/streptomycin (P/S, Procell). HBEC cells were cultured in the bronchial epithelial growth medium (BEGM, Lonza, CC-3170). All the cells were cultured at 37 °C in a 5% CO2 incubator.
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7

LUAD Tissue and Cell Line Protocol

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We obtained 57 tumor tissues and the paired adjacent tissues from patients who received lung resections and were diagnosed with primary LUAD in the Beijing Chao‐Yang Hospital. All patients granted informed consent. Beijing‐ChaoYang Hospital ethics committee checked and approved this study.
LUAD cell‐lines NCI‐H1975 (1101HUM‐PUMC000252) and A549 (1101HUM‐PUMC000002) were obtained from the National Infrastructure of Cell Line Resource. NCI‐H1975 and A549 cells were cultured in 1640 supplemented with 10% fetal bovine serum (FBS: Gibco), 100 U/mL penicillin, and 100 μg /mL streptomycin (ThermoFisher) at 37°C in a humidified 5% CO2 atmosphere.
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8

Characterization of NSCLC Cell Lines

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Non-cancerous, immortalized human lung bronchial epithelial cell line BEAS-2B was purchased from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). Normal fetal lung fibroblast cell HFL1; human LUAD cell lines Calu-3, NCI-H1975, and NCI-H1395; LUSC line NCI-H520; and other NSCLC cell lines A549 and NCI-H1299 were purchased from Procell (Wuhan, China). LUSC lines NCI-H226 and SK-MES-1 were purchased from Shanghai Chinese Academy of Science Cell Bank (Shanghai, China). BEAS-2B was grown in Bronchial Epithelial Cell Growth Medium BulletKit (BEGM; Lonza, Basel, Switzerland). HFL1 was cultured in Ham’s F-12K medium (Gibco, Pittsburgh, PA, USA). Calu-3 and SK-MES-1 were cultured in Eagle’s minimum essential medium (MEM; Gibco). NCI-H1975, NCI-H1395, NCI-H1299, NCI-H520, and NCI-H226 were maintained in RPMI-1640 (Gibco). All cell lines, except for BEAS-2B, were supplemented with 10% fetal bovine serum (FBS), streptomycin (100 μg/mL), and penicillin G (100 U/mL; Gibco). All cell lines were authenticated by short tandem repeat (STR) profiling. Cells were incubated at 37°C in a humidified atmosphere with 5% CO2.
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9

Profiling LUAD cell gene expression

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Human normal lung epithelial cell line BEAS‐2B and LUAD cell line NCI‐H1975 were purchased from Fenghui Biotechnology Co., Ltd. LUAD cell line NCI‐H441 was purchased from BeNa Culture Collection (BNCC). BEAS‐2B cells were cultured in DMEM medium (Gibco, C11995500BT) with 1% penicillin (HyClone, SV30010) and 10% FBS (Gibco, 10099–141). NCI‐H441 and NCI‐H1975 cells were cultured in 1640 medium (Gibco, C11875500BT) with 1% penicillin (HyClone, SV30010) and 10% FBS (Gibco, 10099–141). The cells were cultured at 37°C in an incubator containing 5% CO2. Then, the total RNA was extracted with TRIZOL reagent (Tiangen, dp424, China) and detected for concentration and purity using ultramicro ultraviolet–visible spectrophotometer Nanodrop 2000 (Thermo). After reverse transcription (RevertAid First Strand cDNA Synthesis Kit; Thermo), PCR was performed with a fluorescent quantitative PCR detector (ABI Veriti; Life Technologies) using TB Green Premix Ex Taq II (Takara, RR820A). GAPDH was used as a reference gene. Three repeat samples were taken for each sample (see Table 2 for primer sequences). The mRNA expression level was calculated by 2−△△CT.
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10

FBP1 Knockdown in Lung Cancer Cells

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Human LC cell lines (including NCI‐H1975 and A549 cells) and normal human bronchial epithelial cell line 16HBE were procured from the American Type Culture Collection. NCI‐H1975 and A549 were grown in Dulbecco's modified Eagle medium (Gibco, USA) with 10% foetal bovine serum (FBS, Gibco) and 1% penicillin–streptomycin (Solarbio, China) in a cell culture incubator at 37°C with 5% CO2. Small interfering RNA targeting FBP1 and the relative control (si‐NC) were obtained from RiboBio, and transfection was performed employing Lipofectamine 3000 (Invitrogen) following the manufacturer's instructions.
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