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Complete edta free

Manufactured by Merck Group
Sourced in Japan, United States

COmplete EDTA-free is a lab equipment product designed to facilitate sample processing and protein extraction. The product provides a buffer solution without EDTA, a common chelating agent. This solution is intended for use in various laboratory applications that require protein extraction and processing, while maintaining the integrity of the sample.

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20 protocols using complete edta free

1

Purification of His-Tagged Proteins

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Cell pellets from 1 L LB culture were suspended with 30 mL of buffer A (20 mM Tris-HCl (pH 7.9), 300 mM NaCl, 20 mM imidazole, 5 mM beta-mercaptoethanol (BME), 1% Tween20) supplemented with a tablet protease inhibitor cocktail (complete, EDTA-Free, Sigma). Cells were lysed by sonication. Soluble fractions were separated by centrifugation (20,000 × g for 40 min at 4 °C). The supernatant was loaded on a pre-equilibrated 1 mL HisTrap column (GE Healthcare, USA) with buffer B (20 mM Tris-HCl (pH 7.9), 300 mM NaCl, 20 mM imidazole) and washed with 10 column volumes (CV) of buffer B and 50 CV of buffer C (20 mM Tris-HCl (pH 7.9), 300 mM NaCl, 50 mM imidazole), and eluted with buffer D (20 mM Tris-HCl (pH 7.9), 300 mM NaCl, 300 mM imidazole). Eluent was injected to HiLoad 26/600 superdex 200 pg (GE Healthcare, USA) column equilibrated with buffer E (20 mM HEPES pH 7.5, 300 mM NaCl, 10% Glycerol, 0.5 mM TCEP). The major fractions were analyzed with 4–20% SDS-PAGE Gel stained with coomassie brilliant blue. Protein concentrations were determined by Bradford protein assay kit II (Bio-Rad, USA) with bovine serum albumin as the standard.
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2

Overexpression and Purification of Steroleosin B

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Cells from Escherichia coli strain Rosetta2 (DE3; Merck Millipore, Japan) were transformed with pDEST15-GST-Steroleosin B and pre-cultured overnight in 3-ml of LB medium at 37 °C. Flasks containing 50 ml of LB medium supplemented with 50-µg/ml kanamycin were inoculated with 500 µl aliquots of saturated culture. Cells were cultivated until the optical density at 600 nm (OD600) reached 1.0. The cultures were then supplemented with 1 mM isopropyl β-D-1-thiogalactopyranoside (IPTG) and cultured for a further 3 h at 23 °C. Next, the cells were harvested by centrifugation at 10,000 × g for 10 min at 4 °C. After removal of supernatant, pellets were stored at −80 °C until purification of GST-fused Steroleosin B, as described elsewhere. Briefly, cell pellets were re-suspended in 15 ml aliquots of ice cold extraction buffer containing 1× PBS, 0.1% β-mercaptoethanol and 1× Complete EDTA-free (Sigma-Aldrich, Japan) and then ultrasonically lysed on ice. Homogenates were finally centrifuged at 10,000 × g for 15 min at 4 °C before being subjected to the pull-down assays using SIB, as described above.
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3

Gastric Gland Protein Extraction and Western Blot

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Isolated corpus and antrum gastric glands were lysed using ice-cold lysis buffer (25 mM Tris-HCl, 150 mM NaCl, 1% NP-40, 0.5% Na-Deoxycholate, 0.1% SDS, 1 mM EDTA) with a protease inhibitor cocktail (Complete EDTA free, Sigma-Aldrich) and rotated at 4 °C for 1 h. Lysate was centrifuged at 4 °C for 20 min, and the supernatant was used for western blotting. The protein concentration of the supernatant was measured by Bradford protein assay. The supernatant was mixed with sample buffer and incubated at 95 °C for 5 min. Samples were separated on SDS-PAGE gels and transferred to Nitrocellulose membranes. The membranes were blocked by Blocking One (Nacalai) at room temperature for 1 h and incubated with primary antibodies overnight at 4 °C. The membranes were washed with TBST and incubated with HRP-conjugated secondary antibody at room temperature for 1 h. After washing with TBST, the membranes were incubated with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientific, Waltham, MA, USA) and imaged using a gel imager (LAS-4000, Fujifilm, Tokyo, JAPAN).
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4

Actinomycin D Cellular Assay

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ActinomycinD was purchased from Sigma-Aldrich and used at a concentration of 5 µg/ml. The protease inhibitors were obtained from Roche (Complete EDTA free) and from Sigma-Aldrich (Pefabloc). TURBO DNAse was purchased from Ambion (Life technologies). Antibodies are described in Table 1.
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5

Membrane Protein Extraction via SMALP

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The cells in the lysis buffer (50 mM Tris HCl, 300 mM NaCl, 1 mM MgCl2, pH 8.0, and cOmplete EDTA-free [Sigma]) were lysed on a microfluidizer at 15,000 psi. The cell debris are removed by centrifugation at 10,000g for 20 min at 4 °C, and the membranes are collected by centrifugation at 100,000g for 1 h at 4 °C. The membranes are resuspended in 50 mM Tris HCl, 250 mM NaCl, pH 8.0, with 0.5% SMA 25010 (Xiran SL25010 Polyscope) for 17 h at room temperature (RT). Soluble SMALP particles were obtained by ultracentrifugation at 100,000g for 30 min at 4 °C and loaded into a HisTrap 1-ml column equilibrated in 20 mM Tris HCl, 150 mM NaCl, and 30 mM imidazole, pH 8.0. Elution was carried out in a gradient with the previous buffer supplemented with 170 mM imidazole. Fractions containing the proteins were dialyzed against TBS (20 mM Tris and 150 mM NaCl, pH 8.0) at RT and concentrated with a 100-kDa cut-off Amicon Ultra Centrifugal Filter (Merck). The sample concentration was determined by running a 15% SDS-PAGE with known concentrations of bovine serum albumin.
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6

Western Blot Analysis of P. falciparum

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Schizonts were released from erythrocytes by the addition of phosphate-buffered saline (PBS) containing 0.15% (wt/vol) saponin and protease inhibitors (cOmplete EDTA-free; Sigma) for 3 min on ice. Saponin lysates were solubilized with 3× sample buffer with 5% beta-mercaptoethanol at a concentration of 1.6 × 109 parasites/ml. Parasite extracts were subjected to SDS-PAGE and transferred to a nitrocellulose membrane. Membranes were immunostained with rat antihemagglutinin (anti-HA) (1:1,000 dilution; Roche) and rabbit anti-P. falciparum EBA175 (anti-PfEBA175) (1:2,000 dilution; a kind gift from Christine R. Collins), followed by IRDye 680LT goat anti-rat IgG (1:10,000 dilution; LI-COR) and IRDye 800CW goat anti-rabbit IgG (1:10,000 dilution; LI-COR). The signals were detected by a fluorescence imager (Odyssey CLx; LI-COR).
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7

Kidney Cortex Protein Extraction

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Protein was extracted from a cortex enriched piece of kidney tissue (20-40 mg). Tissue was homogenised in lysis buffer (10 mM Tris–HCl (pH 8.0), 150 mM NaCl, 1% NP-40, 10% Glycerol, 5 mM EDTA) including a protease inhibitor cocktail (Roche, Complete EDTA free, Sigma Aldrich, St Louis, Missouri, USA) using a Bullet Blender at 4°C (Next Advance, Troy, NY, USA; as per the manufacturer’s instructions). The resulting homogenate was then spun at 12000 x g for 20 minutes to clear the lysate. Cleared lysate was aliquoted and stored at -80°C. The protein concentration of the cleared lysate was measured by BCA protein assay kit (Thermo Fischer Scientific).
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8

Protein Extraction and Western Blotting

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HeLa cells or hippocampal neurons were solubilized in phosphate-buffered saline (PBS) containing 1% NP-40 substitute (Wako, Osaka, Japan) and protease inhibitor cocktail (cOmplete EDTA-free; Sigma-Aldrich). After insoluble debris were removed by centrifugation, the supernatant was collected to obtain cell lysates. SDS–PAGE sample buffer was added to the lysates and the samples were boiled for 10 min at 95°C. Proteins were separated on 5–20% SDS–PAGE gels (ATTO, Tokyo, Japan) in SDS running buffer. Proteins were transferred to PVDF membranes (Millipore), which were then blocked with 5% skimmed milk/PBS containing 0.1% Tween 20 (Wako). Membranes were then incubated first with primary antibodies and then with secondary antibodies. The bands were visualized by chemiluminescence using an ECL kit (GE Healthcare, Piscataway, NJ) and detected using x-ray film (Fujifilm, Tokyo, Japan). Immunostaining data were quantified using NIH ImageJ software.
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9

Gastric Gland Protein Extraction and Western Blot

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Isolated corpus and antrum gastric glands were lysed using ice-cold lysis buffer (25 mM Tris-HCl, 150 mM NaCl, 1% NP-40, 0.5% Na-Deoxycholate, 0.1% SDS, 1 mM EDTA) with a protease inhibitor cocktail (Complete EDTA free, Sigma-Aldrich) and rotated at 4 °C for 1 h. Lysate was centrifuged at 4 °C for 20 min, and the supernatant was used for western blotting. The protein concentration of the supernatant was measured by Bradford protein assay. The supernatant was mixed with sample buffer and incubated at 95 °C for 5 min. Samples were separated on SDS-PAGE gels and transferred to Nitrocellulose membranes. The membranes were blocked by Blocking One (Nacalai) at room temperature for 1 h and incubated with primary antibodies overnight at 4 °C. The membranes were washed with TBST and incubated with HRP-conjugated secondary antibody at room temperature for 1 h. After washing with TBST, the membranes were incubated with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientific, Waltham, MA, USA) and imaged using a gel imager (LAS-4000, Fujifilm, Tokyo, JAPAN).
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10

Gastric Gland Protein Extraction and Western Blot

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Isolated corpus and antrum gastric glands were lysed using ice-cold lysis buffer (25 mM Tris-HCl, 150 mM NaCl, 1% NP-40, 0.5% Na-Deoxycholate, 0.1% SDS, 1 mM EDTA) with a protease inhibitor cocktail (Complete EDTA free, Sigma-Aldrich) and rotated at 4 °C for 1 h. Lysate was centrifuged at 4 °C for 20 min, and the supernatant was used for western blotting. The protein concentration of the supernatant was measured by Bradford protein assay. The supernatant was mixed with sample buffer and incubated at 95 °C for 5 min. Samples were separated on SDS-PAGE gels and transferred to Nitrocellulose membranes. The membranes were blocked by Blocking One (Nacalai) at room temperature for 1 h and incubated with primary antibodies overnight at 4 °C. The membranes were washed with TBST and incubated with HRP-conjugated secondary antibody at room temperature for 1 h. After washing with TBST, the membranes were incubated with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Fisher Scientific, Waltham, MA, USA) and imaged using a gel imager (LAS-4000, Fujifilm, Tokyo, JAPAN).
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