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33 protocols using ab267787

1

Quantifying Protein Expressions in SCMECs

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The proteins of SCMECs in each group were also extracted using radioimmunoprecipitation assay (RIPA) cold lysis buffer. Specific operational procedures and primary antibodies were in accordance with that described above. The primary antibodies include β-actin (1 : 1000; 3700S; CST), anti-PTEN antibody (1 : 1000; ab267787; Abcam), phospho-pan-AKT1/2/3 (Ser473) antibody (1 : 500; ab38449; Affinity), and anti-ZO1 tight junction protein antibody (1 : 1000; ab96587; Abcam).
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2

Ubiquitination Profiling of PTEN

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Ubiquitination assay was carried out following a previously published method [28 (link)]. Briefly, the cells were resuspended in the lysis buffer containing protease inhibitor and subjected to ultrasonic lysing. Following 10-min centrifugation at 15000 g, the supernatant was incubated with anti-PTEN (ab267787, Abcam) or anti-IgG (ab172730, Abcam) antibody-coupled agarose beads at 4°C and rotated overnight. After extensive washing, the beads were boiled in 2 × loading buffer for 5 min and isolated using SDS-PAGE, followed by Western blot assay with the anti-Ub antibody (ab6721, Abcam).
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3

Western Blot Analysis of Protein Expression

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Total proteins were obtained from HCC cells using RIPA buffer (Beyotime, Shanghai, China) and quantified by Enhanced BCA Protein Assay Kit (Beyotime). Then, 20 μg proteins were undergoing SDS-PAGE and transferred to the PVDF membrane (Millipore, Billerica, MA, United States). After blocking, the membrane was incubated overnight with primary antibodies at 4°C. The next day, secondary antibody incubation was performed at room temperature for 1–2 h. Enhanced chemiluminescence (ECL) reagent (Millipore) was used for luminous reaction and western blot was photographed by Amersham Imager 680 (GE Healthcare Life Sciences, Pittsburgh, PA, United States). The used primary antibodies: HIF-1α (ab1, Abcam, Cambridge, MA, United States), HIF-2α (ab199, Abcam), RNF146 (ab201212, Abcam), β-tubulin (10094-1-AP, Proteintech, Wuhan, China), PTEN (ab267787, Abcam). p-AKT (Ser473, 66444-1-Ig, Proteintech), AKT (60203-2-Ig, Proteintech), p-mTOR (Ser2448, 67778-1-Ig, Proteintech), mTOR (66888-1-Ig, Proteintech), Ubiquitin (ab7254, Abcam).
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4

Protein Extraction and Western Blot Analysis

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Total cellular protein was extracted using lysis buffer, and protein levels were quantified using a BCA kit (ASPEN Biotechnology, Wuhan, China). Proteins were separated on a 10% SDS-PAGE before being probed with the appropriate primary antibodies for CD9, CD63 TSG101, PI3Kγ (#ab154598, Abcam, Cambridge, UK, 1:500), PIK3R1 (#4257, CST, MA, US, 1:1000), P-Akt (#4060, CST, MA, US, 1:1000), IL-17 (#sc-374218, Santa Cruz, Texas, US, 1:500), PTEN (#ab267787, Abcam, Cambridge, UK, 1:2000) and Bcl-2 (#ab182858, Abcam, Cambridge, UK, 1:1000) and then transferred to polyvinylidene fluoride (PVDF) membranes. The blots were then probed with secondary antibodies, and protein was identified using a LiDE110 scanner (Canon, Japan). GAPDH (#ab37168, Abcam, Cambridge, UK, 1:10,000) was used for normalization, and the AlphaEaseFC software was used to measure protein band density.
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5

Western Blot Analysis of Myocardial Proteins

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Total proteins were extracted from the left ventricles of murine hearts or cultured cells using the RIPA lysis buffer as previously described.31, 32 Next, 20 μg total proteins were separated by 10% SDS‐PAGE, transferred onto PVDF membranes, blocked with 5% skim milk at room temperature and incubated with indicating primary antibodies at 4°C overnight. On the second day, the membranes were probed with horse radish peroxidase (HRP)‐conjugated secondary antibodies and visualized with an electrochemiluminescence reagent. The bands were analysed using an Image Lab software and normalized to GAPDH. The following antibodies were used at a 1:1000 dilution: anti‐NRF2 (#ab92946, Abcam), anti‐glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH, #ab8245, Abcam), anti‐phosphorylated AKT (p‐AKT, #4060, Cell Signaling Technology), anti‐total AKT (t‐AKT, #4685, Cell Signaling Technology) and anti‐PTEN (#ab267787, Abcam).
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6

Protein Extraction and Western Blot Analysis

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Total cellular protein was extracted using RIPA lysis buffer (P0013B, Beyotime, China). The protein content of the samples was determined using the BCA protein assay kit (BL521A, Biosharp, China). The proteins were mixed with SDS-PAGE loading buffer (MB2479, Meilunbio, China) and separated by gel electrophoresis onto PVDF membranes. Subsequently, the membranes were blocked using 5% nonfat milk. Primary antibodies including HDAC3 (1:1000, ab137704, Abcam, UK), PTEN (1:1000, ab267787, Abcam, UK), PIK3 (1:1000, 4257, Cell Signaling Technology, USA), p-PIK3 (1:1000, 4228, Cell Signaling Technology, USA), AKT (1:1000, 9272, Cell Signaling Technology, USA), p-AKT (1:2000, 4060, Cell Signaling Technology, USA), and β-actin (1:1000, ab8227, Abcam, UK) were incubated with the membranes overnight at 4 °C. Then, the membranes were incubated with the respective secondary antibodies. The target protein bands were visualized using a chemiluminescence imaging system (Chemiscope6100, CLiNX, China). β-actin was used as an internal reference to normalize the protein expression levels.
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7

Verification of Protein Levels in Renal Biopsy

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To verify the protein levels of hub genes in human renal biopsy samples, we selected five DN cases and five minimal change disease (MCD) cases as controls. The current study was approved by the ethics committee of Beijing Friendship Hospital affiliated with Capital Medical University. All patients provided written informed consent. The formalin-fixed, paraffin-embedded renal sections were incubated with primary antibodies against ALOX5 (#3289, Cell Signal Technology), PTEN (ab267787, Abcam, Cambridge, UK), and NCF2 (ab109366, Abcam), then analyzed using the streptavidin peroxidase detection system (Abcam) according to the manufacturer’s protocol. We used DAB (Sinopharm, China) as the horseradish peroxidase (HRP)-specific substrate (chromogen).
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8

Exosome Protein Profiling by Western Blot

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Cells or exosomes were lysed in radioimmune precipitation assay (RIPA) lysis buffer (Beyotime) containing protease inhibitor cocktails (Abcam). Protein concentration was determined with BCA Protein Assay Kit (Beyotime, China). A total of 20–30 μg of protein sample was subjected to SDS-PAGE gel, then transferred onto 0.22-mm polyvinylidene difluoride (PVDF) membranes (Millipore). The membrane was blocked in 5% non-fat milk for 2 h at room temperature and incubated with the corresponding primary antibodies at 4°C overnight, following by incubation with the horseradish peroxidase-conjugated (HRP) secondary antibody for 2 h at room temperature. Finally, the membrane was detected using FDbio-Femto ECL (Fudebio, Hangzhou, China) and a chemiluminescence system (Bio-Rad, USA). The primary antibodies for Western blot were anti-GAPDH (1:10,000; proteintech, 60004-1-Ig), anti-CD9 (1:1000; abcam, ab263019), anti-PTEN (1:1000; abcam, ab267787), anti-HSP70 (1:1000; abcam, ab181606) and anti-Calnexin (1:1000; abcam, ab133615), respectively.
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9

EV Protein Extraction and Western Blot

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The total protein was extracted from EVs or lung tissues using RIPA buffer (BioSharp, Beijing, China), followed by the measurement of protein concentration with the use of a BCA kit (Thermo Fisher Scientific, Rockford, IL, USA). The protein was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electrotransferred onto a PVDF membrane, which was subsequently incubated with the primary antibodies overnight at 4°C. Afterward, the membrane was incubated with the horseradish peroxidase-labeled secondary antibody. The ImageQuant LAS4000 mini (GE Healthcare, Piscataway, NJ, USA) was used to visualize the membrane. The primary antibodies against PTEN (ab267787, 1:1,000), p-AKT (ser473, ab81283, 1:5,000), and AKT (ab8805, 1:500) were purchased from Abcam (Cambridge, UK).
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10

Immunohistochemical Analysis of PTEN Expression

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Immunohistochemical staining was used to detect the expression of PTEN. The tissue was fixed with 4% paraformaldehyde, embedded in paraffin, and sectioned with a 3 μm section. After incubation with primary and secondary antibody, the sections were stained with DAB reagent. Primary antibody: anti-PTEN (ab267787, Abcam, CA), secondary antibody: goat anti-rabbit IgG (Biosci, Wuhan China). All slices were photographed at a magnification of × 400.
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