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7 protocols using b 1035

1

Immunofluorescent Labeling of Nasal Tissue

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After decapitation, the head was immediately put into 4% paraformaldehyde (Sigma) overnight at 4 °C, and then subject to decalcification in 0.5 M EDTA (pH 8.0, ethylenediaminetetraacetic acid) for two days. The nose was cut into 20 μm coronal sections on a cryostat. After antigen retrieval in 95 °C waterbath for 12 min, nose sections were first blocked for 60 min in TPBS (0.3% Triton X-100 in phosphate buffered saline) with 2% bovine serum albumin and then incubated at 4 °C with the primary antibodies in the same solution for overnight. Immunofluorescence was achieved by reaction with appropriate secondary antibodies at 1:400 for 1 hr. Tissues were washed in TPBS and mounted in Vectashield (Vector Laboratories). Pictures were taken under a Zeiss LSM 510 confocal microscope. The primary antibodies included biotinylated Dolichos Biflorus Agglutinin (DBA, 1:300, B-1035, Vector Laboratories) and rabbit anit-M3-R (1:300, M0194, Sigma-Aldrich), and the secondary antibodies included streptavidin conjugate 488 (S-32354, Invitrogen) and donkey-anti-rabbit-568 (A10042, Invitrogen). DAPI (4′,6-diamidino-2-phenylindole, Dihydrochloride) (D1306, Invitrogen) was used to stain the cell nuclei.
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2

Immunostaining and Clearing of Pancreatic Tissue

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Thick 100 μm cryostat sections were rehydrated in PBS. Sections and whole mount pancreata were blocked overnight in PBS, 2% donkey serum and 0.5% Triton-100X. The samples were incubated in primary antibodies (Chromogranin A, 1:180 from Abcam, ab15160; insulin, 1:100, from Abcam, ab7842; glucagon 1:200, from Abcam, ab10988); and Dolichos biflorus agglutinin (DBA) biotinylated (1:270, from Vectorlabs, B-1035) for 3 days at 4 °C. Secondary antibodies were applied (from Thermo Fisher Scientific) and AF647-Streptavidin (1:800, from Thermo Fisher Scientific, S21374), BV510-Streptavidin (1:600, from Biolegend, 405233) for 2 days at 4°C. All tissues were cleared with RapiClear 1.52 (from SunJin Lab, RC152001).
Thin sections were incubated in 2% Serum, 0.1% Triton-100X in PBS for 30 min, subsequently incubated in primary antibody in 0.01% Triton-100X in PBS overnight (insulin 1:100, from Abcam, ab7842, glucagon 1:200 from Abcam, ab10988, cleaved caspase 3, 1:400, from Cell Signalling, 9664S), washed 3 times for 10 min the next day, and incubated with secondary antibody in 0.01% Triton-100X for 3 h, washed and mounted.
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3

Spontaneous and Alkaline Stress Tachyzoite Differentiation Assay

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HFFs confluent on coverglass were infected with 1 × 104–5 × 104 tachyzoites. After a four-hour invasion period at 37°C and 5% CO2, the media was exchanged for DMEM supplemented with 10% FBS for spontaneous differentiation assays or RPMI with 1% FBS for alkaline stress differentiation assays. Spontaneous and alkaline stress differentiation assay samples were incubated at 37°C/5%CO2 or 37°C/0% CO2 for 48 h, respectively, before fixation in 4% formaldehyde in PBS for 10 minutes. The assays were incubated for 10 minutes at room temperature in blocking solution (1% bovine serum albumin in PBS). The wells were then incubated in a primary antibody blocking solution containing rabbit anti-GAP45 or guinea pig anti-CDPK1 or biotinylated dolichos (Vector labs B-1035) for 60 minutes at room temperature. Secondary staining was performed with streptavidin-APC and goat anti-rabbit Alexa fluor 488 or goat anti-guinea pig Alexa fluor 488 in blocking solution for 60 minutes at room temperature. Three PBS washes were performed between antibody incubations. Images were acquired with a widefield Nikon Ti epifluorescence scope with 20x objective, with 3 images per coverslip. The percentage of DBL+ vacuoles was determined by manual quantification of vacuoles with DBL staining as a proportion of vacuoles with GAP45 staining. Images included in figure panels were false-colored in FIJI.
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4

Immunohistochemical Analysis of Key Renal Proteins

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Frozen 8-mm sections were washed with PBS, blocked with 5% (w/v) BSA/PBS (1 h at RT), incubated with a primary antibody anti-Xbp1s (1:50; 619502, BioLegend, San Diego, CA), anti- NKCC2 (1:200; NKCC21-A, Alpha Diagnostic International, San Antonio, TX), or anti-NCC (1:200; SPC-402D, StressMarq, Biosciences Inc., Victoria, Canada) at 4°C overnight, and detected by secondary antibodies conjugated with Alexa Fluor 594 or Alexa Fluor 488 (1:500; Molecular Probes, Eugene, OR). Sections stained with Lotus Tetragonolobus Lectin (LTA) were incubated with fluorescein-labeled LTA (1:500; FL-1321, Vector Laboratories, Burlingame, CA) at RT for 30 min before washing. Sections stained with Dolichos Biflorus Agglutinin (DBA) were incubated with biotinylated DBA (1:400; B-1035, Vector Laboratories, Burlingame, CA) at 4°C overnight, and detected by fluorescein Avidin D (1:500; A-2001, Vector Laboratories, Burlingame, CA).
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5

Immunofluorescent Labeling of Nasal Tissue

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After decapitation, the head was immediately put into 4% paraformaldehyde (Sigma) overnight at 4 °C, and then subject to decalcification in 0.5 M EDTA (pH 8.0, ethylenediaminetetraacetic acid) for two days. The nose was cut into 20 μm coronal sections on a cryostat. After antigen retrieval in 95 °C waterbath for 12 min, nose sections were first blocked for 60 min in TPBS (0.3% Triton X-100 in phosphate buffered saline) with 2% bovine serum albumin and then incubated at 4 °C with the primary antibodies in the same solution for overnight. Immunofluorescence was achieved by reaction with appropriate secondary antibodies at 1:400 for 1 hr. Tissues were washed in TPBS and mounted in Vectashield (Vector Laboratories). Pictures were taken under a Zeiss LSM 510 confocal microscope. The primary antibodies included biotinylated Dolichos Biflorus Agglutinin (DBA, 1:300, B-1035, Vector Laboratories) and rabbit anit-M3-R (1:300, M0194, Sigma-Aldrich), and the secondary antibodies included streptavidin conjugate 488 (S-32354, Invitrogen) and donkey-anti-rabbit-568 (A10042, Invitrogen). DAPI (4′,6-diamidino-2-phenylindole, Dihydrochloride) (D1306, Invitrogen) was used to stain the cell nuclei.
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6

Confocal Microscopy of Kidney Organoids

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For confocal microscopy, kidney organoids were differentiated on 96-well No, 1.5 coverslip glass-bottom plates (Mat-Tek). To fix, an equal volume of 8 % paraformaldehyde (Electron Microscopy Sciences) was added to the culture media (4 % final concentration) for 15 minutes at room temperature. After fixing, samples were washed in PBS, blocked in 5 % donkey serum (Millipore)/0.3 % Triton-X-100/PBS, incubated overnight in 3 % bovine serum albumin/PBS with primary antibodies, washed, incubated overnight with Alexa-Fluor secondary antibodies and DAPI (Invitrogen), and washed in PBS. Primary antibodies included ZO-1 (339100; Invitrogen), PAX8 (10336-1-AP, Proteintech), NPHS1 (AF4269, R&D), OAT1 (PA6-26244, Thermo Fisher), CLDN-1 (ab15098, Abcam), SYNPO (sc-21537; Santa Cruz), E-CAD (ab11512, Abcam), WT1 (sc-192; Santa Cruz), CFTR (570 antibody; University of North Carolina), Myosin IIB (3404S, Cell Signaling), CUBN (gift of Dr. Dennis Brown, Massachusetts General Hospital), AQP2 (HPA046834, Sigma), CD144/VE-cadherin (2500T, Cell Signaling), CD146/MCAM (ab75769, Abcam), and CD31/PECAM (555444; BD). LTL (FL-1321, Vector Laboratories) and DBA (B-1035, Vector Laboratories) were similarly applied. Fluorescence images were captured using an inverted Nikon epifluorescence Eclipse Ti or A1R confocal microscope. Automated imaging was performed using a GE INCELL 2000 Analyzer.
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7

Comprehensive Kidney Tissue Imaging Protocols

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For immunohistochemistry (IHC), kidney sections were pretreated to quench endogenous peroxidase (3.0% hydrogen peroxide) and endogenous biotin (SP-2001, Vector Labs), and stained with biotinylated LTL (B-1325, Vector Labs) and DBA (B-1035, Vector Labs) following standard IHC protocol. For immunofluorescence staining, mouse kidneys were fixed in 4% PFA followed by incubation in 30% sucrose overnight at 4°C, embedded in OCT compound (Tissue-Tek), and cryosectioned at 10 μm. Frozen sections were permeabilized with 0.1% PBS- Triton X-100 for 10 min and blocked in 5% goat serum for 1 hour. Primary antibodies were incubated overnight at 4°C followed by secondary antibodies incubated at room temperature for 1 hour. Following primary antibodies were used: WT1 (sc-192, Santa Cruz), Polycystin-1 (sc-130554, Santa Cruz), Laminin (L9393, Sigma), GFP (GFP-1020, Aves), Villin-1 (2369, Cell Signaling), JAG1 (sc-8303, Santa Cruz), PAX2 (71-6000, Thermo Fisher), megalin (sc-16478, Santa Cruz), cubilin (sc-20609, Santa Cruz). Tissue sections were mounted in media containing DAPI and imaged by a Zeiss confocal microscope.
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