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33 protocols using prism for windows version 5

1

Statistical Analysis of Experimental Data

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Statistical analysis was performed using Graph Pad Prism for Windows, version 5 (Graph Pad Software Inc., San Diego, CA, USA 2005). Data were analyzed using the Student’s t-test. All analyses used a 95% CI (confidence interval), and the difference obtained was significant if the p value < 0.05.
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2

Anticonvulsant Effects of Plant Extract

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All data were presented as mean ± standard error of the mean data were analyzed using one-way analysis of variance (ANOVA) with drug treatment as a between-subjects factor. Whenever ANOVA was significant, further comparisons between vehicle and drug-treated groups were performed using the Newman–Keuls’ test. In analyzing the possible role of GABAergic mechanisms in the anticonvulsant effect of the extract, two-way ANOVA with the Bonferroni's post hoc test (treatment × dose) was performed. In all the tests, GraphPad Prism for Windows Version 5 (GraphPad Software, San Diego, CA, USA) was used for all statistical analyses. P < 0.05 was considered significant. Survival curves were plotted for the 4-AP test by plotting percentage survival against time. Analysis of survival curves was done with the log-rank test.
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3

Bleomycin-Induced Lung Injury: Pinocembrin Attenuation

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Statistical analysis was performed using GraphPad Prism for Windows Version 5.01 (GraphPad Software Inc., La Jolla, CA, United States). Parameters were assessed for Gaussian distribution using the D’Agostino normality and Pearson omnibus test. For parametric data, paired two-tailed t-tests were performed to compare between lung segments received bleomycin only with saline-infused control segments and lung segments received bleomycin plus pinocembrin infusion. For data that did not meet assumptions for Gaussian distribution, the Wilcoxon matched-pairs signed rank test was used. In all cases, a p-value less than 0.05 was defined as a significant difference. All values are reported as means (± SEM).
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4

Comprehensive Statistical Analysis of Biomarkers

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IBM SPSS Statistics 20 for Windows (IBM Inc., Armonk, NY, USA) and GraphPad Prism for Windows, Version 5 (GraphPad Software Inc, La Jolla, CA, USA), were used for all analyses. The data were presented as mean (М) and standard deviation (± SD) or 95% confidence interval (CI), median (Ме) and interquartile range (IQR), as well as numbers (n) and frequencies (%) for categorical variables. In order to compare the main parameters of the patients’ groups (subject to the type of distribution of the parameters analyzed), either a two-tailed Student t-test or Mann-Whitney U-test was used, depending on data distribution, as determined by the D’Agostino-Pearson omnibus normality test. In order to compare categorical variables between groups, the Chi22) and Fisher F exact tests were used. The factors, which could be potentially associated with the CD31+/annexin V+ to CD62E+ ratio, were determined by uni(bi)-variate and multi-vatriate regression analysis. A calculated difference of P < 0.05 was considered statistically significant.
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5

Nonparametric Analysis of OTA and CTN

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Data were analysed and plotted with the GraphPad Prism for Windows version 5 (San Diego, CA, USA) and R statistical software version 3.3.1 (The R Foundation for Statistical Computing, Vienna, Austria). OTA and CTN values are presented as medians and interquartile ranges, and were analysed using a nonparametric version of Tukey’s multiple comparison test. All applied tests were two-tailed. P values of less than or equal to 0.05 were considered statistically significant.
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6

Cytotoxicity Assay Protocol for Compound Screening

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In parallel to the pseudotyped screening, all extracts were tested on HEK-293T-hACE2 (20 µg/mL in vehicle; 0.2% DMSO or water in final well volume) and incubated for 48 h. Cytotoxicity was measured using a lactate dehydrogenase (LDH) assay (G Biosciences, #786–210) per manufacturer protocol. Additional cytotoxicity assays were run in a serial dilution at 512–2 µg/mL or 64–2 µg/mL (< 0.2% DMSO or water in final well volume) in the same LDH assay. Cell viability assays on HEK293T-hACE2 cells and HaCaT cells were performed with the CellTiter-Glo® Luminescent Cell Viability Assay (Promega) according to manufacturer protocol. MTS assay were performed on various cell lines (PBM and Vero) using the CellTiter 96® Non-Radioactive Cell Proliferation (Promega) kit as previously described66 (link). Briefly, cell proliferation, with or without test compounds, was measured after four days’ incubation. Cytotoxicity was expressed as the concentration of test compounds that inhibited cell proliferation by 50% (CC50) and calculated using the Chou and Talalay method66 (link). For MTS assays, the half maximal effective concentration (EC50) was calculated using GraphPad PRISM for Windows, version 5 (GraphPad Software Inc., San Diego, CA, 2005).
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7

Baicalin Cytotoxicity and Inhibition

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Graph Pad Prism for Windows, Version 5 (Graph Pad Software Inc., San Diego, CA, 2005) was used to determine the half maximal cytotoxic concentration (CC50) and half maximal inhibitory concentration (IC50) values of baicalin. All IC50 and CC50 values were caculated as the means ± standard error of the mean (SEM) from triplicate assay from three independent experiments. Selectivity Index value (SI) was determined as the ratio of CC50 to IC50.
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8

Sheep Lung Injury Biomarker Analysis

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Statistical analysis was done using GraphPad Prism for Windows Version 5.01 (GraphPad Software Inc., La Jolla, CA, United States). Each parameter was evaluated for Gaussian distribution using the Pearson omnibus and D’Agostino normality test. For parametric data, paired two-tailed t-tests were performed to compare between bleomycin-infused and saline-infused control segments in the same sheep whereas the Wilcoxon matched-pairs signed rank test was used for data that did not meet assumptions for Gaussian distribution. Differences between the drug (TM) treated sheep and vehicle (sterile saline) treated sheep were analyzed using an unpaired t-test for parametric data and a Mann-Whitney test for nonparametric data. A p-value less than 0.05 was defined as a significant difference. All values are reported as means ± SEM.
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9

Statistical Analysis of Clinical Outcomes

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Statistical analysis of the results obtained was carried out in SPSS system for Windows, Version 22 (SPSS Inc., Chicago, IL, USA) and GraphPad Prism for Windows, Version 5 (GraphPad Software Inc., La Jolla, CA, USA). The data were presented as mean (М) and standard deviation (± SD) or 95% confidence interval (CI); median (Ме) and interquartile range (IQR), as well as number (n) and frequencies (%) for categorical variables. To compare the main parameters of patients' groups (subject to the type of distribution of the parameters analyzed), two-tailed Student's t-test or Mann–Whitney U-test was used. To compare categorical variables between groups, chi-squared test (χ2) and Fisher F exact test were used. The factors, which could be associated potentially with clinical outcomes, were determined by log regression analysis. Reclassification methods (C-statistics) were utilized for prediction performance analyses. A calculated difference of P < 0.05 was considered significant.
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10

Survival Analysis of Clinical Cohort

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Graphpad Prism for Windows, version 5, was used for statistical analysis. The Kaplan–Meier method and the Cox regression test were used for survival analysis curves. Comparison among qualitative variables was performed by means of χ2-test (or Fisher's exact test when necessary). All statistical tests received the same level of significance of 0.05.
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