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Bio plex manager 3

Manufactured by Bio-Rad
Sourced in United States

Bio-Plex Manager 3.0 software is a data analysis software provided by Bio-Rad. It is designed to facilitate the analysis of data generated from Bio-Rad's Bio-Plex multiplex assay platform.

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7 protocols using bio plex manager 3

1

Plasmodium Species Diagnosis via LDR-FMA

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PCR-based Plasmodium species diagnosis employed a ligase detection reaction-fluorescent microsphere assay (LDR-FMA). All methods for PCR amplification of small sub-unit rRNA target sequences and Plasmodium species-specific detection by LDR-FMA have been described in detail by McNamara et al. [83 (link)]. Species-specific fluorescence data were collected using the Bio-Plex Manager 3.0 software (Bio-Rad).
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2

Peri-implant and Tooth Characteristics

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For all measurements recorded at six sites of implants and teeth (PI, GI, PD, and BOP), an average (mPI, mGI, mPD, mBOP) was calculated for the zirconia implant and the tooth of each patient, if available also for the titanium implant. The emergence profiles of the crowns were assessed on radiographs (Fig. 2) as score 0 (gradual transition from the implant to the crown) or score 1 (absence of a gradual transition, or presence of an adjacent over- or under-contoured restoration, or adjacent implants with connected supra-structures).

Peri-apical radiograph of a zirconia implant-supported single crown

The biochemical read-outs were analyzed using Bio-Plex Manager 3.0 (Bio-Rad Laboratories, Hercules, CA, USA). A constant (0.1) was added to remove zero values. Because not all data were normally distributed, differences between zirconia implants and teeth, and differences between zirconia and titanium implants, were analyzed using Wilcoxon matched-pair signed-rank test, a non-parametric test. A Spearman’s correlation was used to test the relationship between measurements at implants and teeth. The Wilcoxon-Mann-Whitney test was used to analyze differences between independent groups. p values <0.05 were accepted for statistical significance.
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3

Multiplex Cytokine Profiling in Mice

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The concentrations of obesity‐related cytokines and chemokines were measured from the plasma of the killed mice using a Bio‐Plex Pro Mouse Cytokine 23‐Plex Panel (Bio‐Rad, Hercules, CA, USA). The concentrations of cytokines and chemokines were calculated using Bio‐Plex Manager 3.0 software (Bio‐Rad) with a 5‐parameter curve‐fitting algorithm applied for standard curve calculations.
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4

Multiplex Cytokine Profiling in Mouse Heart and Serum

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Heart tissue and serum levels of cytokines and chemokines were determined with a Bio-Plex Pro Mouse Cytokine Grp I Panel 23-plex (Luminex Corporation, Austin, TX, USA) using Bio-Plex 200 System (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s guidelines. A total of the following 23 cytokines and chemokines: G-CSF, GM-CSF, Eotaxin, INF-g, IL-1a, IL-1b, IL-2, IL-3, IL-4, IL-5, IL-6, IL-9, IL-10, IL-12p40, IL-12p70, IL-13, IL-17, KC, MCP-1, MIP-1a, MIP-1b, RANTES, and TNF-α were assayed with a single assay according to the kit instructions. Briefly, serum samples and heart tissue protein lysate samples were incubated with the microbeads for 30 min. After the incubation, the detection antibodies were introduced subsequently to the tests and incubated for 30 min. Further, the plates were washed with a wash buffer and the supernatant was removed and Streptavidin-Phycoerythrin was added to each well. Next, the plates were shaken at 850 rpm for 10 min and then washed and the supernatant was removed again. Finally, an assay buffer was added to each well to resuspend the pellet, and then the plate was read in a calibrated Bio-Plex machine. Concentrations of above cytokines and chemokines were analyzed with the Bio-Plex Manager 3.0 software (Bio-Rad, Hercules, CA, USA).
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5

Plasma Cytokine and Chemokine Profiling

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We analyzed plasma cytokine and chemokine levels on Days 1, 2, 3, 4, 5, and 8 after hospital admission by using a Bio-Plex system. Serum aliquots (50 μL) were collected from peripheral blood and analyzed with the Bio-Plex Pro Human Cytokine Grp 1 Panel 27-plex Assay, in accordance with the manufacturer's protocol (Bio-Rad, Hercules, CA, USA). Cytokine and chemokine concentrations were calculated with Bio-Plex Manager 3.0 software (Bio-Rad, Tokyo, Japan). A five-parameter curve-fitting algorithm was applied for calculations of the standard curve.
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6

Cytokine Quantification in Biological Fluids

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Blood and peritoneal fluid were collected at time of sacrifice and then centrifuged at 10,000 rpm for 10 minutes at 4°C. Cytokine concentrations were determined using the Bio-Plex suspension array system and Bio-Plex Mouse Cytokine Multiplex Panel according to the manufacturer’s instruction (Bio-Rad, Hercules, CA) and analyzed using Bio-Plex Manager™ 3.0 software. All samples were run in duplicate.
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7

Cytokine Profiling in Mouse Serum

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Blood was withdrawn via cardiac puncture after sacrifice. Samples were centrifuged at 4°C with 10,000rpm for 10 min to procure serum. Plasma cytokines concentration was determined using the Bio-Plex suspension array system and Bio-Plex Mouse Cytokine 8-Plex Panel according to the manufacturer’s instructions (Bio-Rad, Hercules, CA). The concentration of IL-10 in the coculture supernatant from Treg and naïve CD4+ T cells was also determined using Bio-plex system. Levels of IL-1β, IL-2, IL-6, IL-10, IL-13, MCP-1, TNF, and IFN-γ were reported in pg/mL. All samples were run in duplicate. Results were analyzed using Bio-Plex Manager™ 3.0 software.
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