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24 protocols using akti 1 2

1

Modulation of T Cell Metabolism and Activation

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T cells were cultured in RPMI medium (no glucose) containing 10% dialyzed serum (Thermo Fisher, Germany), 1 mM sodium pyruvate, 2 mM L-glutamine, with or without 10 mM glucose. For murine T cell activation, 96-well flat-bottom tissue culture plates were pre-coated with αCD3 antibody (5.0 μg/mL; eBioscience, Frankfurt, Germany), and cells were cultured with or without R837 (1 μg/mL)/R848 (10 μg/mL; InvivoGen, San Diego, CA, USA) for 24–48 h (5 × 105 cells/well). For some experiments, cells were treated with the indicated inhibitors such as 2-DG (1 mM; Sigma, Germany), rapamycin (2 μM), and Akti-1/2 (1 μM; Sigma, Germany). For human T cell activation, 96-well flat-bottom tissue culture plates were pre-coated with αCD3 antibody (5.0 μg/mL; eBioscience, Frankfurt, Germany), and human CD8+ T cells were cultured with or without R848 (1 μg/mL; InvivoGen, San Diego, CA, USA) for 24 h (5 × 105 cells/well). For the indicated experiments, human CD8+ T cells were treated with 2-DG (10 mM; Sigma, Germany), rapamycin (10 μM), and Akti-1/2 (5 μM; Sigma, Germany). For all experiments, triplicate wells were performed under each condition.
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2

Insulin-Stimulated Glucose and Phosphate Transport

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Cells were starved in serum-free α-minimal essential medium for 14–16 h before the experiment. Cells were then treated with indicated concentrations of inhibitors for 20 min: wortmannin (500 nM) and LY294002 (50 µM; Calbiochem, San Diego, CA, USA), KP372-1 (100 nM; Echelon Biosciences, Salt Lake City, UT, USA), and Akt-I-1/2 (100 nM; Sigma-Aldrich, St. Louis, MO, USA). ETOH and DMSO were used as vehicle controls. Inhibitors were delivered to each well in 1-µl volumes. After treatment with an inhibitor or vehicle control, cells were treated with 100 nM insulin (Novo Nordisk) or 5 µl H2O for 30 min. Wells were then rinsed with 500 µl buffer A 3 times. Each well received 500 µl of transport buffer B and was incubated for exactly 10 min. Reactions were quenched by washing each well with 500 µl of ice-cold buffer A for Pi transport and buffer A + 5 mM d-glucose for glucose transport. Cells were lysed by treatment with 400 µl of 1 M NaOH and neutralized with 400 µl of 1 M HCl. In both assays, radioactivity was quantified by liquid scintillation counting, normalized to protein content determined by BCA protein assay (Thermo Fisher Scientific Life Sciences), and reported as moles of Pi or glucose transported per minute per mg protein.
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3

Akt Inhibition in CD8+ T Cells

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NV and EM CD8+ T cells were cultured for 2 hours in a 24 well plate (3x106 cells/well) under non-activating and activating conditions. For Akt inhibition, cells were treated with Akti1/2 (10 μM, Sigma-Aldrich). Cell pellets were washed twice with cold PBS, snap frozen in EtOH containing dry ice and stored at -80°C. Metabolomic assays and analysis were performed by Metabolon Inc. (Durham, USA).
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4

Pharmacological Inhibition of Cellular Pathways

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BEZ235 (Lclabs), Rapamycin (Lclabs), UO126 (Promega), Akti 1/2 (Sigma), Silvestrol (Med-Chemexpress), and Cymarin (Sigma), Rocaglamid (Sigma) were dissolved in DMSO. Doxycycline and cycloheximide (both Sigma) were dissolved in Ethanol.
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5

PIK3CA Silencing and Akt Inhibition

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PIK3CA siRNA and its negative control sequence were synthesized by Shanghai Shenggong Bioengineering Co., Ltd. (Shanghai, China). PIK3CA in Nalm-6 cells was silenced by RNA interference technology using Lipofectamine 2000 kits (Thermo Fisher Scientific, Waltham, MA, USA). Briefly, Nalm-6 cells were seeded in 6-well plates containing serum-free RPMI-1640 medium and transfected by PIK3CA siRNA (set as siPIK3CA group) or its negative control (served as PIK3CA-Control group). After 6 h incubation at 37℃, 5% CO2, residual liquid in each well was discarded and replaced by RPMI-1640 complete medium (containing 10% FBS) for continued incubation. Nalm-6 cells without any treatment were used as a Mock group. In addition, Nalm-6 cells transfected by PIK3CA siRNA were subjected to culture with RPMI-1640 complete medium containing both 10% FBS and 5 µmol/L of Akti-1/2 (Akt inhibitor, Sigma, San Francisco, CA, USA) as a siPIK3CA+Akti-1/2 group. All cells were cultured under 37℃, 5% CO2.
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6

Myoblast Differentiation and Signaling Pathways

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C2C12 myoblasts were grown in DMEM (Welgene, Gyeongsan, Korea) supplemented with 10% fetal bovine serum (FBS) (Corning, NY) and antibiotics (100 U/mL penicillin and 100 μg/mL streptomycin; Sigma-Aldrich, MO). Cells were differentiated in DMEM supplemented with 2% horse serum (Sigma-Aldrich, MO). Recombinant hHGF (R&D Systems, MN) and recombinant TGF-β (eBioscience, MA) were used at appropriate concentrations. U0126 (an MEK1/2 inhibitor, Sigma-Aldrich, MO), SB203580 (a p38 inhibitor, Calbiochem, MA), SP600125 (a JNK inhibitor, Sigma Aldrich, MO), and Akti1/2 (an Akt inhibitor, Sigma-Aldrich, MO) were used at 10 μM, and rapamycin (an mTOR inhibitor, Sigma-Aldrich, MO) was used at 100 nM for experiments.
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7

Platelet Activation Signaling Pathways

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Washed platelets were pre-incubated with vehicle control, Akt1/2 inhibitor (Akti 1/2, 5μmol/L, sigma), or p38 MAP kinase inhibitor (SB203580, 10μmol/L, Cell Signaling) or left alone for 5 min at 37°C. Afterwards, platelets were stimulated with ADP (20 μmol/L) for an additional 15 min at 37°C. Samples were fixed in 1% buffered paraformaldehyde and then stained with antibodies against P-selectin-FITC (BD Bioscience), CD147-PE (eBioscience), CD154-PE (Pharmingen), or isotype control antibodies and analyzed by flow cytometry (FACSCanto II, BD Biosciences).
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8

Murine B-cell Activation Assay

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We prepared single-cell suspensions of mouse splenocytes as previously described23 (link). We purified murine B cells from splenocytes using a B-cell isolation kit (Miltenyi Biotec, Bergisch Gladbach, Germany) according to the manufacturer’s guidelines.
We cultured B cells in RPMI complete medium (Thermo Fisher Scientific, Waltham, MA, USA). For murine B-cell activation, purified B cells were seeded into 96-well flat-bottom tissue culture plates at a density of 5 × 105 cells/well with or without TLR2 ligand (P3C, 2 μg/mL; InvivoGen, San Diego, CA, USA)/HBV particles [Multiplicity of infection (MOI): 1,000] stimulation for 24 h. In some experiments, we treated the cells with the indicated inhibitors, such as 2-deoxy-d-glucose (2-DG), oligomycin, 6-diazo-5-oxo-l-norleucine (DON), Rapamycin, and Akti-1/2 (Sigma, St. Louis, MO, USA).
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9

AKTi1/2 Inhibition on Salmonella Infection

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Overnight serum-starved HEK293 cells were pre-treated with 10 μM AKTi1/2 (Sigma-Aldrich) for 30 min before infection with S. Typhimurium (wild type or ΔsopB). At 10 min post infection, cells were washed with ice-cold PBS and harvested in lysis buffer (50 mM HEPES (pH 7.4), 1% (v/v) Triton x-100, 150 mM sodium chloride, 1 mM EDTA, 10 mM sodium pyrophosphate, 30 mM sodium vanadate, 0.5 mM AEBSF and protease inhibitor cocktails). Cell lysates were cleared by centrifugation at 16,000 g for 10 min and protein concentrations were quantified by BCA protein assay. Equal amounts of cell lysates were subjected to SDS-PAGE and immunoblotting, staining with anti-phospho Ser473 Akt, anti-Akt, or anti-Tubulin antibodies, followed by IRdye800 anti-rabbit or IRdye680 anti-mouse secondary antibodies. Fluorescence intensities were detected using the LI-COR Biosciences Odyssey Infrared Imaging system.
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10

Primary Breast Cancer Sample Culturing

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Cell lines (DSMZ, Braunschweig, Germany) were cultured according to data sheet. Primary BC samples obtained from patients treated at the Women's University Hospital Tuebingen, Germany, were dissociated to single cells as previously described [11 (link)] and cultured in RPMI 1640 medium (R8758, Sigma, St-Louis, MO, USA) supplemented with 15% heat-inactivated FCS (#10500, Gibco, Life Technologies, Grand Island, NY, USA) and 1% v/v Pen/Strep (P4333, Sigma). The study was approved by the Ethics Committee of the University of Tuebingen, Germany. MK-2206, wortmannin, rapamycin, bortezomib (all by Selleckchem, Houston, TX, USA) or Akti1/2, leptomycin B, cycloheximide, and doxycycline (all by Sigma) were resolved or diluted according to data sheet and applied as indicated.
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