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39 protocols using bay 11 7082

1

Recombinant Mouse C8G Protein Purification

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Lipopolysaccharide from Escherichia coli 0111:B4 was purchased from Sigma-Aldrich (St. Louis, MO, United States). Recombinant mouse IFN-γ protein was purchased from R&D systems. The bacterially expressed recombinant mouse C8G protein was prepared as described previously (Lee et al., 2008 (link)). Briefly, the recombinant mouse C8G protein without the signal peptide was expressed in E. coli (strain BL21) as a glutathione S-transferase (GST) fusion protein. The protein was purified using glutathione Sepharose 4B beads (GE Healthcare, Chicago, IL, United States). GST was removed by thrombin digestion. C8G was purified and concentrated. SDS-PAGE with Coomassie Brilliant Blue R250 staining showed that the purity of C8G was over 95%. JTE013, S1P, STATTIC, and BAY 11-7082 were purchased from Cayman Chemical (Ann Arbor, MI, United States). CYM-5478 was purchased from Aobious Inc. (Gloucester, MA, United States).
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2

Inhibition of NF-κB and PI3K Pathways

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RAW 264.7 macrophages were treated with 15μM Bay11-7082 (Cayman Chemical), an inhibitor of κB kinase phosphorylation, for 1 h to inhibit the NF-κB signaling pathway, and then cells were further treated [27 (link)]. RAW 264.7 macrophages were treated with 25μM LY294002 (Cayman Chemical), an inhibitor of PI3K activation [28 (link)], for 1 h, and cells were further treated. Inhibitors were administered prior to LPS and GYY4137 treatments; fresh media was applied following inhibition.
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3

Characterizing Human Microglial Cell Responses

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The HMC3 human microglial cell line (ATCC CRL-3304) and EMEM medium (ATCC 30–2003) were purchased from American Type Culture Collection (ATCC, Manassas, VA). BrdU (59–14-3) and mouse anti-BrdU (B2531) monoclonal antibody (mAb) were purchased from Sigma (St. Louise, MO). BAY 11–7082 was obtained from Cayman Chemical (Ann Arbor, MI, cat# 10010266). Human IL-6 DuoSet ELISA (DY206) kits were purchased from R&D Systems (Minneapolis, MN). Phospho-p53 (Ser 15) antibody (#9284), p53 mouse mAb (#2524), NF-κB p65 rabbit mAb (#8242), p21 Waf1/Cip1 rabbit mAb (#2947), and β-Actin mouse mAb (#3700) were purchased from Cell Signaling (Danvers, MA). Alexa Fluor-594 labeled goat anti-mouse IgG (#A10680) and Alexa Fluor-647 labeled goat anti-rabbit IgG (#A21244) were purchased from Thermo Fisher (Waltham, MA). Mouse anti-human p16 mAb (cat# 51–1325GR) was obtained from BD Biosciences. Mouse anti-human CD68 mAb (Cat# 14–0688-82, clone: KP1) was obtained from Thermo Fisher. Pro-Long Gold Anti-Fade Reagent (#9071) was obtained from Cell Signaling Technology (Danvers, MA).
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4

Adipocyte-Macrophage Interaction Modulation

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Differentiated 3T3-L1 cells were incubated overnight using the contact method in serum-free DMEM with 2% FFA-free BSA. The cells were then co-cultured with RAW264.7 cells in the same medium for 24 h with butyrate (0, 0.5 mmol/L) and PGE2 (0, 5 ng/mL), after which the culture medium was harvested. The levels of FFAs in the co-culture medium were measured using an acyl-coenzyme A oxidase–based colorimetric assay method, which enables detection of C8 (octane) and longer-chain fatty acids. The assay was conducted in accordance with the manufacturer’s instructions [37 (link)]. Levels of free glycerol in the medium were measured using an Adipolysis Assay kit (Cayman Chemical). To examine the effects of BAY 11-7082 and SC 58635, 3T3-L1 cells were pretreated by culturing at 37 °C for 60 min in serum-free DMEM with 0.5% (v/v) DMSO (vehicle), 5.0 ng/mL PGE2 (Cayman Chemical) dissolved in DMSO, 10 μmol/L BAY 11-7082 (Santa Cruz Biotechnology, Santa Cruz, CA) dissolved in DMSO, or 1 μmol/L SC 58635 (R&D Systems) dissolved in DMSO. 3T3-L1 cells were then stimulated with TNF-α (with or without butyrate) in 2% FFA-free BSA medium and cultured for 24 h, after which levels of FFAs and free glycerol released into the medium were measured.
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5

Endothelial Cell Signaling Pathway Assays

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Anti-p-p65 antibody, Gö6976, heparin, PMA, Röttlerin, and PKC-δ siRNA were purchased from Sigma-Aldrich (St.Louis, MO). Bay 11-7082, Bay 61-3606, piceatannol, and caffeic acid phenethyl ester (CAPE) were purchased from Cayman Chemicals (Ann Arbor, MI). Lipofectamine 3000 reagent was acquired from Invitrogen Life Technologies (Gaithersburg, MD). Antibody specific for Thy-1, and p-PKC-δ was purchased from Cell Signaling Technology (Danvers, MA). Anti-Syk, p65, PKC-δ, and G3PDH were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibody specific for p-Syk was purchased from EMD Millipore (Temecula, CA). Dual-Luciferase assay kit was purchased from Promega (Madison, WI). Penicillin and streptomycin were purchased from HyClone (South Logan, Utah). Endothelium cell growth factor (ECGS) was purchased from Biomedical Technologies (Stoughton, MA). Fetal calf serum (FCS), Medium 199 (M199), and GlutaMAX Supplement were obtained from GIBCO (Grand Island, NY). Endothelial Cell Growth Medium MV was purchased from PromoCell (Heidelberg, Germany).
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6

NF-κB Pathway Antibodies and Assays

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Antibodies against p-RelA-S536 (#3033; 1:1000), RelA (#8242; 1:1000), RelB (#4922, 1:2000; IHC: #10544), c-Rel (#4727; 1:1000), NF-κB2 (#3017; 1:1000), LKB1 (#3050; 1:1000), and NUAK1 (#4458; 1:1000) were purchased from Cell Signalling Technology (Danvers, MA). Antibodies against lamin A/C (MAB3211; 1:500) and actin (A2066; 1:20000) was purchased from Millipore (Temecula, CA, USA). Antibody against tubulin (T5168; 1:20000) was purchased from Sigma. HRP-conjugated antibodies against mouse IgG (NA931; 1:10000) and rabbit IgG (NA934; 1:10000) were purchased from Cytiva. All antibodies were diluted in tris-buffered saline-Tween 20 containing 5% bovine serum albumin, with the exception of NUAK1 (tris-buffered saline-Tween 20 containing 5% nonfat milk). BAY 11-7082 was purchased from Cayman Chemical (cat. 10010266; Ann Arbor, MI, USA). ROS-Glo H2O2 Assay was purchased from Promega (cat. G8820).
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7

Microglia Response to LiCl and LPS

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Primary retinal microglia were treated with different concentrations of LiCl (0, 0.5, 1, and 2 mM) for 12 hours or 24 hours. Microglia were divided into three groups: (1) control, (2) LPS treatment, and (3) LPS + LiCl treatment. The cells were pretreated with PBS or LiCl (1 mM) for 30 minutes and then activated by 20 ng/mL LPS (Sigma-Aldrich, St. Louis, MO, USA) for 12 hours or 24 hours. For the nuclear factor kappa B (NF-κB) inhibitor study, microglia were pretreated with BAY-11-7082 (1 mM; Cayman Chemical, Ann Arbor, MI, USA) for 2 hours, followed by activation with 20 ng/mL LPS for 12 hours.
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8

Murine Dendritic Cell Activation Assay

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Reagents were purchased from the following companies: nicotine, LPS and ovalbumin (OVA) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Recombinant murine GM-CSF, IL-4 and TGF-beta were obtained from R&D (Minneapolis, MN, USA). RPMI 1640 medium and fetal bovine serum (FBS) were purchased from Hyclone (Logan, UT, USA). H-2Kb CTL peptide of OVA (SIINFEKL) was synthesized by Sangong, (Shanghai, China). BrdU cell proliferation kit and IFN-gamma Elispot kit were obtained from Roche (Basel, Switzerland) and U-CyTech Biosciences (Utecht, Netherlands) respectively; Recombinant murine IL-6, TNF-alpha, Brefeldin A solution and Fluorescein-conjugated antibodies to CD4, CD25, Foxp3, CD80, CD86, CD40, OX40L, 4-1BBL, MHC class I, MHC class II, CD11c, TGF-beta, TNF-alpha, and IL-6 were obtained from eBioscience (San Diego, CA, USA). Recombinant Mouse IFN-beta, IFN-beta neutralizing antibody (MIB-5E9.1), B7H1 neutralizing antibody (10F.9G2), fluorescein-conjugated antibodies to IFN-beta, SIINFEKL-H2Kb, B7H1, GITRL, GITR were purchased from Biolegend (San Diego, CA, USA). The NF-kappaB inhibitor PDTC and Bay 11-7082 were purchased from Cayman Chemical (Ann Arbor, MI, USA). TRI-zol was purchased from Invitrogen life technologies (Carlsbad, CA, USA). SYBR Premix Ex Taq and PrimeScript Reverse Transcriptase were purchased from Tarkara (Dalian, Liaoning, China).
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9

Regulation of serpinA3N in Hypothalamic Neurons

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To investigate the regulation of serpinA3N gene expression specifically in neurons, the embryonic immortalised hypothalamic cell line, N42, was used (Cellution Biosystems Inc., Ontario, Canada. Please see https://www.cedarlanelabs.com/Products/Detail/CLU122 for a comprehensive list of all genes expressed by these cells including the leptin receptor). These cells have been previously shown to provide a good model for hypothalamic neuron gene expression studies [44 (link)].
Cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) (Life Technologies, Paisley, UK) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Life Technologies) maintained at 37 °C under 5% CO2. Neurons were grown in 60-mm plates (n = 6) to 90% confluence then challenged with either 50 nM leptin (R&D Systems, Abingdon, UK), 200 μM palmitic acid or 200 μM oleic acid conjugated to fatty acid-free bovine serum albumin (BSA) (Sigma-Aldrich, UK), or the appropriate vehicle as a control. For leptin, this was a mixture of 12 μM HCl and 6 μM NaOH and for fatty acids 50 μM fatty acid-free BSA. To inhibit the NFkB pathway, N42 neurons were treated with 50 μM BSA or 200 μM palmitate in the presence and absence of 25 μM of the NFkB inhibitor BAY 11-7082 (Cayman Chemical, UK). All solutions were filter sterilised prior to use. For all treatments, medium was removed after 6 h.
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10

IL-6 and PGE2 Modulation by NFκB Inhibitor

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Patient fibroblast strains were cultured in 24-well plates as described and then simultaneously treated with either zymosan alone or with 100 μg/ml zymosan and 5 μg/ml BAY-11-7082 (NFκB inhibitor; Cayman Chemical) in MEM + 0.05% FBS. Cells were incubated for 24 h at 37°C prior to supernatant collection. The amount of IL-6 and PGE2 in the supernatant was determined with ELISAs/EIAs as detailed earlier. Assays were performed a minimum of two times in quadruplicate.
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