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Procarta plex cell lysis buffer

Manufactured by Thermo Fisher Scientific
Sourced in United States

Procarta Plex Cell Lysis Buffer is a reagent used to lyse or break open cells in preparation for downstream analysis. It is designed to efficiently release intracellular components, including proteins and nucleic acids, while maintaining their integrity. The buffer is suitable for use with a variety of cell types and applications.

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14 protocols using procarta plex cell lysis buffer

1

Profiling Tumor Cytokines and Chemokines

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To profile the cytokines and chemokines in tumor samples, the 17-Plex ProcartaPlex™ immunoassay (Invitrogen, Cat# EPX170-26087-901) was performed under the manufacturer’s instructions. Fresh tumor tissues were weighted and prepared for extraction of suspension proteins. Tumor tissues were then subjected to homogenization with 1 mm glad beads of 60 s in ProcartaPlex™ Cell Lysis Buffer (Invitrogen, Cat# EPX-99999-000) in the FastPrep-24 5G benchtop reciprocating homogenizer (MP Biomedicals, Cat# 116005500). Protein concentration was measured in the tumor lysates using the BCA methods. Values were normalized based on protein concentration.
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2

Lung Cytokine Measurement Protocol

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Lung lobes were homogenized in M tubes (Miltenyi Biotec) containing 1ml of ProcartaPlex Cell Lysis Buffer (Invitrogen EPX-99999–000) with Halt Protease Inhibitor (Invitrogen 78440) and DNase (30 mg/ml; Sigma-Aldrich) using a GentleMACS tissue dissociator (Miltenyi Biotec). Homogenates were centrifuged to pellet debris, and supernatants were filtered twice through a 0.22 μm pore size Costar SpinX column (Corning) to exclude mycobacteria, frozen at −80°C, and assayed after a single freeze-thaw cycle. Total protein was measured by bicinchoninic acid (BCA) assay (ThermoFisher), and these values were used to normalize individual analyte levels in each sample. IL-4, IL-5, and IL-13 levels in lung homogenates were measured using Cytokine Bead Array Flex Sets (BD); bead fluorescence was measured on an LSRII flow cytometer (BD Biosciences) and analyzed by four-parameter log-logistic curve-fitting to the standard curve. IFNγ levels were quantified using a magnetic Luminex assay (ThermoFisher Scientific) and analyzed using BioPlex Manager software (Bio-Rad).
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3

Cytokine Profiling of Cardiac Tissue

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Cardiac tissue from the apices were lysed with the ProcartaPlex Cell Lysis Buffer (Invitrogen) using Miltenyi M Tubes and the Program Protein_01 of gentleMACS Dissociator (Mylteni). Protein was extracted by centrifuging at 16,000xg for 10 min at 4 °C, and supernatants were harvested. Total protein concentration was measured using the Bio-Rad DC Protein Assay Kit I, and total protein was equalized across all samples. Cytokines and chemokines were quantified using the Bio-Plex Pro Mouse Cytokine 23-plex Assay per manufacturers instructions.
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4

Cytokine Profiling of Mouse Lung Tissue

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Lung tissue homogenate was obtained by homogenizing 40 mg of mouse lung tissue with 200 µL of lysis buffer (Procartaplex Cell Lysis Buffer, Invitrogen, MA, USA) containing 15% protease inhibitors (Complete™ Mini Protease Inhibitor Cocktail, Merck, Darmstadt, Germany). After centrifugation at 16,000× g for 10 min at 4 °C, the supernatant was collected and its protein concentration was determined using the BCA method (Pierce Chemical Co., Rockford, USA). Supernatants were then stored at −80 °C until cytokine analysis.
Levels of interferon gamma (IFN-γ), tumour necrosis factor alpha (TNF-α) and interleukin-1β (IL-1β), IL-5, IL-6, IL-10, IL-12 (p70), IL-13, IL-17A and IL-23 were measured in the supernatant of lung tissue homogenate with mouse cytokine magnetic bead panels (Bio-Plex Pro Mouse Cytokine Assay, Bio-Rad Laboratories S.A., Madrid, Spain) according to the manufacturer’s instructions. Lower limits of detection were 1.84, 5.8, 10.36, 3.57, 0.74, 2.95, 1.62, 47.2, 2.65 and 3.4 pg/mL for IFN-γ, TNF-α, IL-1β, IL-5, IL-6, IL-10, IL-12 (p70), IL-13, IL-17A and IL-23, respectively.
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5

Quantifying Inflammatory Markers in Stroke

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After transcardial perfusion with 0.9 % NaCl, the dissected peri-infarct areas were lysed with ProcartaPlex cell lysis buffer (EPX-99999-000, Invitrogen) and homogenized with microbeads for 1 min. After centrifugation at 16,000 G for 10 min, total protein concentration of the supernatant was measured by BCA assay. Cytokine and chemokine 22-ProcartaPlex immunoassay (IL-1, IL-1, IL-2, IL-4, IL-5, IL-6, IL-10, IL-12p70, IL-13, IL-17A, G-CSF, GM-CSF, IFN, TNF, CXCL1, CXCL2, CXCL10, CCL2, CCL3, CCL5, CCL7 and CCL11) was performed according to manufacturer's recommendations with provided assay solutions (EPX220-30122-901, Thermo Fisher Scientific Inc.). Brief, magnetic beads were transferred into each well. After a washing step with a hand-held magnetic plate washer and wash buffer, universal assay buffer was added to each well and standards as well as samples (2.5 µg/µL of total protein) were added to the appropriate wells. After an overnight-incubation and washing steps, the detection antibody and streptavidin-PE were incubated for 30 min one after another with in-between washing steps. The samples were measured in reading buffer with Luminex Magpix Systems and Luminex xPonent Software (Merck Millipore).
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6

Growth Factor Profiling of BM-MSCs

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The production of growth factors was determined in BM-MSC lysates at P3. Briefly, the BM-MSCs were lysed with ProcartaPlexTM Cell Lysis Buffer and analyzed in duplicate using a ProcartaPlex Custom Panel (Thermo Fisher Scientific) according to the manufacturer’s instructions. Specifically, the kit contained beads for detection of angiopoietin-1, brain-derived neurotrophic factor (BDNF), epidermal growth factor (EGF), hepatocyte growth factor (HGF), and vascular endothelial growth factor A (VEGF-A). Analysis was performed using a LABScan 3D instrument and ProcartaPlex Analyst 1.0 Software (One Lambda/Thermo Fisher Scientific). The amount of basic fibroblast growth factor was quantified in duplicate with ELISA (RayBiotech, Norcross, GA, United States).
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7

Quantifying Cytokine Response to Viral Infection

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Cells were seeded at a density of 1x10 5 cells/cm 2 and infected with Tha or Th2P-4M at a MOI of 5. Forty-eight hours post-infection, cells were lysed using Procartaplex TM cell lysis buffer (EPX-99999-000, Thermo Scientific) according to the manufacturer's instructions to quantify protein expression in the cellular cytoplasm. Intracellular protein concentrations of human IFNβ, IFN-γ, IL-1β, IL-6, IL-15, CXCL10, LIF, CCL5, and TNF-α were quantified using a 9-plex Procartaplex assay (PPX-09, Thermo Scientific). In short, DropArray 96-well-plates (96-CC-BD-05, Curiox) were blocked using 1% BSA for 30 min. After blocking, 20 𝜇L of cell lysate was added per well. According to the protocol, plates were stepwise incubated with 5 𝜇L detection antibody, 10 𝜇L streptavidin-PE, and 10 𝜇L reading buffer per well before being read by the Luminex 200™ instrument (Thermo Scientific).
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8

Brain Tissue Collection and Cytokine Quantification

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One hour after the last RI test, brains were rapidly removed after cervical dislocation and sliced to 1mm thick coronal sections using the mouse brain slicer matrix (Alto Stainless Steel Coronal 1.00mm Brain Matrix, CellPoint Scientific) on ice. The medial prefrontal cortex, ventral striatum, hypothalamus, and DRN were removed using 2 mm punch cannula (Harris Uni-Core-2.00, Electron Microscopy Sciences) in ice-cold PBS. Samples were collected into 1.5 mL tubes, immediately frozen on dry ice, and stored at −80 °C. To measure brain IL-1β level, 100 μL extraction solution (20 mmol/L Tris-HCl, 150 mmol/L NaCl, 1 % Triton-X100, and 1 μg/mL protease inhibitor cocktail [Complete tablet; Roche Diagnostics] in distilled water) was added to each frozen brain sample, and samples homogenized on ice. Then, samples were agitated for 90 min at 4 °C, centrifuged at 956 × g for 20 min at 4 °C, and the supernatants were collected into new tube. They were stored at −80 °C until ELISA assays were performed. For multiplex ELISA analysis, the DRN sample was collected the same as described above for IL-1β measurement, except the tissue was homogenized with ProcartaPlex cell lysis buffer (ThermoFisher) and left on ice for 30 min before centrifugation and collection of supernatant.
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9

Cytokine/Chemokine Profiling in Skeletal Muscle

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Sample preparation and analysis were performed using Luminex-xMAP-technology-based Magpix (Thermo Fisher Scientific, Waltham, MA, USA), according to the manufacturer’s instructions. Briefly, skeletal muscle tissue extracts were prepared using Procarta Plex Cell Lysis Buffer (Thermo Fisher Scientific). Total protein concentrations were determined using a Pierce 660 nm Protein Assay Kit (22662, Thermo Fisher Scientific), according to the manufacturer’s instructions. Human Cytokine/Chemokine 34-ProcartaPlex Immunoassays (EPXR340-12167-901, Thermo Fisher Scientific) were used to quantify the expression of 34 human cytokines/chemokines (GM-CSF, MIP-1α, IL-10, IFNγ, IL-1α, IL-1RA, IL-4, IL-6, IL-8, IL-15, IL-17A, IL-21, MCP-1, RANTES, IL-22, CXCL12α, Eotaxin, GRO-α, IFN α, MIP-1 α, TNF-β, IL-1β, IL-2, IL-5, IL-7, IL-9, IL-13, IL-18, IL-23, IL-27, IL-31, IP-10, MIP-1β, and TNF-α) in all protein samples (12.5–25 µL, equivalent to 2.5 mg of tissue). All quantification runs were repeated four times independently, and the mean values of the detected concentrations of each cytokine/chemokine were used for statistical analysis.
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10

Farnesol Modulation of Skeletal Muscle

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SkMs were seeded on 6-well plates (48,000 cells/well) and left untreated or were treated with free farnesol, farnesol-SUV, farnesol-MLV, control-SUV, or control-MLV. After 24 h, cells were washed with HEPES BSS (Lonza: CC-5024) and left unstimulated or stimulated with fatty acids C16[1]c or C18[2]c. After 48 h, cells were washed with HEPES BSS (Lonza: CC-5024) and lysed in 400 µL Procarta Plex Cell Lysis Buffer (Thermo Fisher Scientific). The protein concentrations of SkM lysates were determined using Pierce 660 nm Protein Assay Kit (22662, Thermo Fisher Scientific), according to the manufacturer’s instructions. Customized ProcartaPlex immunoassays (Thermo Fisher Scientific) were performed to quantify the concentration of different markers in 25 µL of cell lysates using Luminex xMAP technology-based Magpix (Thermo Fisher Scientific), according to the manufacturer’s instructions. The amount of each marker was normalized to one µg of total cellular proteins.
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