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7 protocols using anti cd86 clone gl 1

1

Splenic B Cell Activation Assay

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Splenic cells from C57BL/6
mice were isolated by forcing spleen tissue through the mesh into
PBS containing 2% fetal calf serum and 1 mM EDTA, and red blood cells
were depleted by lysis buffer. Cells were cultured in 96-well U-bottom
dishes (1 × 106 cells/mL in RPMI 10% FCS) and incubated
with BTK inhibitors in different concentrations (1, 10, 100, 1000
nM) for 24 h at 37 °C in 5% humidified CO2. Following
a 24 h incubation, cells were stimulated with anti-IgM overnight (5
μg/mL, Sigma-Aldrich). Subsequently, cells were stained with
anti-B220 (clone RA3-6B2, Biolegend) and anti-CD86 (clone GL-1, Biolegend)
antibodies (anti-mouse CD86 Biolegend 105008 1:400, anti-mouse/human
CD45R/B220 Biolegend 103212 1:400) for 30 min at 4 °C. Single-cell
suspensions were analyzed by a flow cytometer (CytoFlex, Beckman Coulter).
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2

Phenotypic Characterization of Cells

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Cells were stained with live/dead Aqua (Thermofisher L34965) prior to staining with anti-MHCII (clone M5.114.15.2, Biolegend), anti-CD80 (clone 16-10A1, Biolegend) and anti- CD86 (clone GL-1, Biolegend) (Fig 4) on ice for 30 minutes. Cells were washed and fixed in 2% para-formaldehyde (VWR 76221–378) prior to acquisition on an LSRII instrument. For sorting experiments cells were stained with live/dead Aqua (Thermofisher L34965) prior to staining with anti-HA (clone 16B12, Biolegend) and sorted using a MoFLo Astrios or FACS Jazz instrument (Children’s Hospital of Philadelphia Research Institute Flow Cytometry Core Facility).
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3

Comprehensive Immune Profiling of Tumor Microenvironment

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Tumors enzymatically digested by ± 2.3 Wunsch units / ml Liberase TL (Roche, Basel, Switzerland) and tumor draining lymph nodes were passed through 70 μm cell strainers. The generated single cell suspensions were stained with the live/dead marker Zombie Aqua (Biolegend, San Diego, CA, USA) and subsequently blocked for unspecific binding to CD16/32 (TruStain fcX, Biolegend). In order to investigate different myeloid cell populations and endothelial cell activation the following antibodies were diluted in FACS buffer (1% FCS, 0.02% NaN3 and 3 mM EDTA in PBS): anti-CD11b (clone M1/70, Biolegend), anti-CD11c (clone N418, Biolegend), anti-B220 (clone RA3-6B2, Biolegend), anti-CD86 (clone GL-1, Biolegend), anti-CD45 (clone 30-F11, Biolegend), anti-Gr1 (clone RB6-8CS, Biolegend), anti-Ly6C (clone HK1.4, Biolegend), Ly6G (clone 1A8, Biolegend), ICAM-1 (clone YN1/1.7.4, Biolegend), VCAM-1 (clone MVCAM.A, Biolegend) and CD31 (clone MEC 13.3, BD Biosciences, Franklin Lakes, NJ, USA). Samples were washed with FACS-buffer and analyzed in a FACSCanto II cytometer (BD Biosciences, Franklin Lakes, NJ, USA). Data analysis was performed with FlowJo software (TreeStar, Ashland, OR, USA).
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4

Splenic B-cell Modulation by Ibrutinib Analogs

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Splenic cells from C57BL/6
mice were isolated by forcing spleen tissue through the mesh into
PBS containing 2% fetal calf serum and 1 mM EDTA, and red blood cells
were depleted by lysis buffer. Cells were cultured in 96-well U-bottom
dishes (1 × 106 cells/mL in RPMI 10% FCS) and incubated
with ibrutinib, 1b, and 1f in different
concentrations (1, 10, 100, 1000 nM) for 24 h at 37 °C in 5%
humidified CO2. Following a 24 h incubation, cells were
stimulated with anti-IgM overnight (5 μg/mL, Sigma-Aldrich).
Subsequently, cells were stained with anti-B220 (clone RA3-6B2, Biolegend)
and anti-CD86 (clone GL-1, Biolegend) antibodies (anti-mouse CD86
Biolegend 105008 1:400, anti-mouse/human CD45R/B220 Biolegend 103212
1:400) for 30 min at 4 °C. Single-cell suspensions were analyzed
by a flow cytometer (CytoFlex, Beckman Coulter).
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5

Murine Splenic B Cell Activation Assay

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Splenic cells from C57BL/6
mice were isolated by forcing spleen tissue through the mesh into
PBS containing 2% fetal calf serum and 1 mM EDTA, and red blood cells
were depleted by lysis buffer. Cells were cultured in 96-well U-bottom
dishes (1 × 106 cells/mL in RPMI 10% FCS) and incubated
with ibrutinib, IbrCl-1342 in different concentrations (1, 10, 100,
and 1000 nM), for 24 h at 37 °C in 5% humidified CO2. Following a 24 h incubation, cells were stimulated with anti-IgM
overnight (5 μg/mL, Sigma-Aldrich). Subsequently, cells were
stained with anti-B220 (clone RA3-6B2, BioLegend) and anti-CD86 (clone
GL-1, BioLegend) antibodies (anti-mouse CD86, BioLegend 105008 (1:400)
and anti-mouse/human CD45R/B220, BioLegend 103212 (1:400)) for 30
min at 4 °C. Single-cell suspensions were analyzed by a flow
cytometer (CytoFlex, Beckman
Coulter).
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6

Flow Cytometry Analysis of Immune Cells

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Antibodies were all purchased from BD Biosciences, unless indicated otherwise. Briefly, cells were first incubated with anti-mouse CD16/32 (Fc block) for 15 min at 4°C and then stained with FITC, PE, APC or PerCP.Cy5.5 conjugates of anti-MHC-II (clone 2G9), anti-CD11c (clone HL3, Biolegend), anti-F4/80 (clone CI:A3-1), anti-CD80 (clone 16-10A1), anti-CD86 (clone GL1) or anti-CD11b (clone M1/70) for 30 min at 4°C. For unconjugated anti-CD120a (TNFRp55, clone 55R-286) or anti-CD120b (TNFRp75, clone TR75-89) antibodies, the cells were stained a second time with PE-conjugated anti-hamster polyclonal antibody.
For intracellular staining of splenocytes, the cells were stimulated with PMA/ionomycin (50/750 ng/ml, eBioscience) for 5 h in the presence of GolgiPlug (BD Biosciences). After washing, cells were stained with anti-MHC-II and anti-CD11c, fixed with 1% paraformaldehyde, and then a permeabilizing solution BD FACS (BD Biosciences) was applied for intracellular staining with anti-IL-12/23p40 (clone C15.6).
For detection of Th1 and Th17 lymphocytes, the cells were stained with anti-CD4 (clone RM4-5) and anti-CD3 (clone 145-2C11), fixed and permeabilized as described above using anti-IL-17A (clone eBio17B7C15.6, eBioscience) or anti-IFN-γ (clone XMG1.2).
Data were obtained on a FACSCalibur flow cytometer (BD Biosciences) and analyzed with FlowJo software (Tree Star, Ashland, OR).
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7

Flow Cytometric Analysis of Immune Cells

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The primary antibodies used for flow cytometry were as follows: anti‐F4/80 (clone BM8, BioLegend), anti‐CD11c (clone N418, BioLegend), anti‐MHC II (clone 10‐3.6, BioLegend), anti‐PDCA1 (clone 927, BioLegend), anti‐Gr1 (clone RB6‐8C5, BioLegend), anti‐CD4 (clone GK1.5, BioLegend), anti‐CD8a (clone 53‐6.7, BioLegend), anti‐IFN‐γ (clone XMG1.2, BioLegend), anti‐CD44 (clone IM7, BioLegend), anti‐CD80 (clone 16‐10A1, BioLegend), anti‐CD62L (clone MEL‐14, BioLegend), anti‐CD11b (clone M1/70, BioLegend), anti‐CD86 (clone GL‐1, BioLegend), anti‐I‐A/I‐E (clone M5/114.15.2, BioLegend), DC Marker (clone 33D1, BioLegend), anti‐Siglec‐H (clone 551, BioLegend), anti‐CD3ε (clone 145‐2C11, BioLegend), anti‐CD19 (clone 6D5, BioLegend), anti‐Ly‐6G (clone 1A8, BioLegend) and anti‐CD335 (clone 29A1.4, BioLegend). Mononuclear cells were isolated from the spleen and draining lymph nodes. A total of 1 × 106 cells were incubated with 1·5 mg mL−1 antibody for 30 min at 4°C. For intracellular staining, cells were fixed and permeabilized using fixation/permeabilization buffer (eBioscience) for 30 min at 4°C. The cells were then washed and stained for 30 min at 4°C with antibodies diluted with permeabilization buffer. The cell suspensions were analysed on an LSRII flow cytometer (BD Biosciences), and the data were analysed using FlowJo.
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