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Ecodry kit

Manufactured by Takara Bio
Sourced in United States

The EcoDry kit is a lab equipment product from Takara Bio designed for the purification and concentration of nucleic acids. It utilizes a novel drying technology to efficiently remove water from samples, enabling the effective recovery of nucleic acids.

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6 protocols using ecodry kit

1

Quantifying gene expression in radish and tobacco

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Total RNA from radish and tobacco leaves was prepared using TRIzol Reagent (Invitrogen), and first-strand cDNAs were generated using the cDNA EcoDry Kit (Clontech). The qPCR conditions and gene-specific primers, with the exception of those for tobacco NtAN1 and NtAN2, were as described in previously (Lim et al., 2016a (link),b (link)). The qPCR primers for NtAN1 and NtAN2 were as follows: NtAN1 (F, 5′-ACCATTCTCGAACACCGAAG-3′; R, 5′-TGCTAGGGCACAATGTGAAG-3′) and NtAN2 (F, 5′-GTAGACTTCCTGGAAGGACGGCAA-3′; R, 5′-GGCCGAGGTCTGAATATGGTGATC-3′). Gene expression was normalized using the RNA polymerase-II (RPII) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) genes for radish and tobacco, respectively, as internal references. Three biological replicates were examined for each sample.
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2

Transcriptome Analysis of Leukocytes and Urine Sediments

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For reverse transcription polymerase chain reaction (RT‐PCR) amplification of mRNA and direct sequencing, total RNA was isolated from peripheral leukocytes using RNAlater RNA Stabilization Reagent (Qiagen Inc.) and the RNA was then reverse transcribed into complementary DNA (cDNA) using an EcoDry Kit (Clontech Laboratories, Inc.). RNA from urine sediments were isolated as previously described (Fu et al., 2016; Kaito et al., 2007).
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3

RNA Extraction and cDNA Synthesis

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Total RNA was extracted using RNasey mini kit (QIAGEN). Total 1 ug RNA was used to synthesize cDNA using RNA to cDNA EcoDry kit (Clontech). Relative expression determined by standard ∆∆Ct method.
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4

Tobacco Gene Expression Profiling

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Total RNA from tobacco roots, stems, leaves, floral tissues including sepals, petals, stamens and pistils were prepared using TRIzol Reagent (Invitrogen) and first-strand cDNAs were generated using the cDNA EcoDry kit (Clontech, Madison, USA). The qPCR conditions and gene-specific primers are described in previous studies [20 (link),30 (link)]. Gene-specific primers for NtF3′5′H, NtMYB3 and NtETC1 are listed in Table S1. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) gene, which was previously used in gene expression analysis of transgenic tobaccos was used as an internal reference [8 (link),30 (link)]. Three biological replicates were examined for each sample.
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5

Quantitative RT-PCR Analysis of Plant Transcripts

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Total RNA from Arabidopsis and rice leaves was isolated using TRIzol Reagent (ThermoFisher Scientific). After DNaseI treatment (NEB, according to manufacturer’s instructions), cDNA was synthesized with 1 μg of total RNA by Oligo (dT)-primed reverse transcription using EcoDry kit (Clontech, Takara, USA). qRT-PCR was performed on the Applied Biosystems ViiA 7 Real-Time PCR System using PowerSYBR Green/ROX Master Mix (ThermoFisher Scientific). OsActin and AtUbq5 were used as internal controls for rice and Arabidopsis respectively. The primers used for qPCR have been listed in (Additional file 18: Table S11). The relative expression of various genes between induced (Estradiol) and uninduced (DMSO) samples was calculated using the 2(−ΔΔCt) method [58 (link)].
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6

Quantification of Igf1 and Tgfb1 mRNA

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RNA was isolated from cultured cells using the RNeasy kit (Qiagen, Valencia, CA). Reverse transcription was carried out using RNA to cDNA EcoDry kit (Clontech, Mountain View, CA) according to manufacturer’s protocol. Igf1 andTgfb1 mRNA levels were determined by real-time PCR using iQ SYBR Green Supermix in an iCycler iQ5 real-time PCR detection system (Bio-Rad, Hercules, CA). GAPDH was used as the housekeeping gene.
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