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3 protocols using sca 1 apc clone d7

1

Prostate Cell Isolation and RNA Extraction

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Prostate lobes were dissociated and stained for FACS based on published methods20 (link). Briefly, prostate lobes were dissected, minced, and incubated at 37°C in 10%FBS/DMEM containing 1 mg/ml collagenase (Gibco, cat. no. 17018–029). Further dissociation to a single cell suspension was achieved by incubation in Trypsin/0.05% EDTA (Invitrogen cat. no. 25300) for 5 minutes at 37°C, followed by serially passing through 18-G and 20-G needles and filtering through a nylon mesh filter with a 40 μm pore size. Cells were stained for 20 minutes at 4°C. Antibodies used are: Sca-1-APC (clone D7; eBioscience, cat. no. 17–5981–82), 1:500; Ter119-FITC (clone TER-119; eBioscience, cat. no. 11–5921–85), 1:250; CD31-FITC (clone 390; eBioscience, cat. no. 11–0311–85), 1:250; CD45-FITC (clone 30-F11; eBioscience, cat. no. 11–0451–85), 1:250; CD49f-PE (clone eBioGoH3; eBioscience, cat. no. 12–0495–83) 1:333. Cells were sorted using a FACS AriaII cytometer (BD Biosciences), and analysis of flow cytometry data was performed using FlowJo Software (Treestar). Following FACS, isolated cells were centrifuged at 500g for 5 minutes. The pellet washed in PBS, homogenized in lysis buffer from the RNAqueous-Micro RNA Isolation Kit (Ambion AM1931), the mirVana miRNA Isolation Kit (Ambion AM1560) and RNA extracted following kit instructions.
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2

Phenotyping Freshly Isolated Follicular Lymphoma

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For the phenotyping of freshly isolated FL, harvested FL cells were subjected to red blood cell lysis (as described above), pre-incubated with anti-mouse CD16/32 (FcRII blocker), and stained with the following monoclonal anti-mouse antibodies: GR1 APCeFluor780 (clone RB6-8C5, eBioscience, RRID: AB_1518804), F4/80 APCeFluor780 (clone BM8, eBioscience, RRID: AB_2735036), CD201 PE (clone eBio1560, eBioscience, RRID: AB_914317), SCA1 APC (clone D7, eBioscience, RRID: AB_469488), CD45 PE-Cy7 (clone 30-F11, BD Biosciences, RRID: AB_394489), TER119 FITC (clone TER119, eBiosceicne, RRID: AB_465311), CD2 FITC (clone RM2-5, eBioscience, RRID: AB_464874), CD5 FITC (clone 53-7.3, eBioscience, RRID: AB_464909), CD8a FITC (clone 53-6.7, eBioscience, RRID: AB_469897), B220 FITC (clone RA3-6B2, BD Biosciences, RRID: AB_394618), CD48 FITC (clone HM48-1, eBioscience, RRID: AB_465078). DAPI was used to exclude dead cells. Cells were analyzed by BD FACSymphony S6 equipped with BD FACS Diva Software (Becton Dickinson) and further analyzed by Flow Jo software.
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3

Prostate Cell Isolation and RNA Extraction

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Prostate lobes were dissociated and stained for FACS based on published methods20 (link). Briefly, prostate lobes were dissected, minced, and incubated at 37°C in 10%FBS/DMEM containing 1 mg/ml collagenase (Gibco, cat. no. 17018–029). Further dissociation to a single cell suspension was achieved by incubation in Trypsin/0.05% EDTA (Invitrogen cat. no. 25300) for 5 minutes at 37°C, followed by serially passing through 18-G and 20-G needles and filtering through a nylon mesh filter with a 40 μm pore size. Cells were stained for 20 minutes at 4°C. Antibodies used are: Sca-1-APC (clone D7; eBioscience, cat. no. 17–5981–82), 1:500; Ter119-FITC (clone TER-119; eBioscience, cat. no. 11–5921–85), 1:250; CD31-FITC (clone 390; eBioscience, cat. no. 11–0311–85), 1:250; CD45-FITC (clone 30-F11; eBioscience, cat. no. 11–0451–85), 1:250; CD49f-PE (clone eBioGoH3; eBioscience, cat. no. 12–0495–83) 1:333. Cells were sorted using a FACS AriaII cytometer (BD Biosciences), and analysis of flow cytometry data was performed using FlowJo Software (Treestar). Following FACS, isolated cells were centrifuged at 500g for 5 minutes. The pellet washed in PBS, homogenized in lysis buffer from the RNAqueous-Micro RNA Isolation Kit (Ambion AM1931), the mirVana miRNA Isolation Kit (Ambion AM1560) and RNA extracted following kit instructions.
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