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5 protocols using pgc 1α

1

APAP-Induced Cell Apoptosis and Autophagy

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APAP (Bioxtra, ≥99.0%) was purchased from Sigma-Aldrich (St. Louis, MO, USA). RPMI-1640 medium, dual antibodies (penicillin and streptomycin), PBS, and 0.25% trypsin were purchased from HyClone. Fetal bovine serum was purchased from Gibco. CCK-8 was purchased from Nanjing Enjing Biotechnology. An Annexin V/PI double staining apoptosis kit and nuclear protein extraction kit were purchased from Nanjing Kaiji Biotechnology. Autophagy double standard adenovirus reagent was purchased from Han Heng Biotechnology. A BCA protein quantitative kit, JC-1 and MitoSox were purchased from Thermo Fisher. MitoTracker Red and transfection reagent were purchased from Invitrogen. The qPCR kit was purchased from AG Biotechnology, and the small interfering RNA product was purchased from Beijing Qing Ke Biotechnology. The primary antibodies used in this study included PARK7 (Abcam, #ab76008), LC3B (Abcam, #ab192890), P62 (Abcam, #ab109012), Keap1 (Abcam, #ab227828), Nrf2 (Abcam, #ab62352), PGC1-α (Affinity, #AF5395), NRF1 (Affinity, #AF5298), TFAM (Affinity, #AF0531), β-tubulin, actin, and TBP antibodies and goat anti-rabbit IgG and goat anti-mouse IgG antibodies, which were purchased from Affinity. All other chemicals were analytical grade chemicals provided by commercial suppliers.
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2

Protein Expression Analysis by Western Blot

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Protein samples were extracted from cells or kidney tissues as described previously.24 (link) Briefly, treated cells or kidney tissues were lysed in RIPA lysis buffer containing protease inhibitor and the protein concentrations were finally determined by BCA kit. Then, the protein samples were fractionated by SDS-PAGE (10–15% polyacrylamide gels) and then transferred to PVDF membranes, which were blocked and then incubated with the appropriate primary antibodies and secondary antibody. Primary antibodies were used to detect PARP-1 (1:1000; Cell Signaling Technology, Beverly, MA), SIRT-1 (1:1000; Cell Signaling Technology, Beverly, MA), p-AMPK (Thr172) (1:1000; Cell Signaling Technology, Beverly, MA), FN (1:500; Abcam, Cambridge, MA), PGC-1α (1:500; Affinity Biosciences, Cincinnati, OH).35 (link) β-Actin (1:1000; Cell Signaling Technology, Beverly, MA) was used as an internal control. The protein expression levels of the target genes were quantified by relative densitometry performed by ImageJ (National Institutes of Health) and normalized to the protein expression levels of β-Actin. The values were shown as changes relative to those of the control sample.49 (link)
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3

Protein Expression Analysis in Muscle Tissue

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Western blotting was performed as previously reported [22 ]. LD muscle samples were homogenised in RIPA lysis buffer (Beyotime biotechnology, Shanghai, China) containing a protease inhibitor (Roche, Shanghai, China). Proteins were separated on 10% SDS–PAGE gel and then were transferred onto a PVDF membrane (Bio-Rad, Shanghai, China). The membrane was blocked with 5% skimmed milk for 1 h at room temperature, and then incubated with the respective primary antibody overnight at 4 °C. Anti-slow MyHC (Sigma, Cat. No. M8421), anti-fast MyHC (Sigma, Cat. No. M4276), PGC-1α (Affinity Biosciences, Cat. No. AF5395) and GAPDH (Absin, Cat. No. abs132004) were used. The membranes were washed six times, and subsequently incubated with secondary antibodies (CST) (1:2000 dilution in 5% milk/1 × TBST) for 1 h. Proteins were detected using an ECL reagent (Bio-Rad, Shanghai, China) on a Molecular Imager ChemiDoc XRS + System (Bio-Rad). The western blots were quantified using the ImageJ software (National Institutes of Health).
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Immunohistochemical Analysis of Cardiac Proteins

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To determine cardiac protein expression and localization, the tissue sections were deparaffinized and rehydrated. Endogenous peroxidase was inactivated by 3% hydrogen peroxide. Antigens were retrieved using citrate buffer (0.01 M, pH 6.0) at 100 °C for 3 min. After blocking with 5% BSA, the sections were incubated with antibodies against alpha-smooth muscle actin (α-SMA, 1:100, Santa Cruz Biotechnology), COL1A1 (1:100, Santa Cruz Biotechnology), 8-hydroxy-2’-deoxyguanosine (8-OHdG, 1:100, Santa Cruz Biotechnology) or PGC-1α (1:100, Affinity Biosciences Ltd.) at 4 °C overnight. Following incubation with a secondary antibody at 37 °C for 1 h, color was developed with a DAB Horseradish Peroxidase Color Development Kit (BOSTER Biological Technology, Wuhan, China), followed by counterstaining with hematoxylin.
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5

Western Blot Antibody Analysis Protocol

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Western blot analysis was performed as described previously [9 (link)]. The antibody information used in the experiment is shown below: p38 (#8690S, 1:1000; Cell Signaling Technology, Danvers, MA, USA), Bcl-2 (AF6139, 1:1000; Affinity Bioscience), Bax (#2772, 1:1000; Cell Signaling Technology), AMPKα (#5823, 1:1000; Cell Signaling Technology), p-AMPKα (#11818, 1:1000; Cell Signaling Technology), SIRT1 (#2493, 1:1000; Cell Signaling Technology), PGC1α (AF5395, 1:1000; Affinity), TLR4 (AF7017, 1:1000; Affinity), p65 (#8242, 1:1000; Cell Signaling Technology), p-p65 (#3033, 1:1000; Cell Signaling Technology), p-IKBα (#2859, 1:1000; Cell Signaling Technology), β-actin (AC038, 1:1000; ABclonal, Woburn, MA, USA), and horseradish peroxidase (A0208, 1:1000; Beyotime, Shanghai, China). Differences in protein transfer efficiency between blots were normalized based on the quantification of β-actin.
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