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Anti h3k4me2

Manufactured by Abcam
Sourced in United States

Anti-H3K4me2 is a laboratory reagent used for the detection and analysis of dimethylation of the lysine 4 residue on histone H3 (H3K4me2). It is a specific antibody that binds to this epigenetic modification, which is associated with active gene transcription. The product can be used in various applications, such as chromatin immunoprecipitation (ChIP), western blotting, and immunohistochemistry, to study the distribution and regulation of H3K4me2 in biological samples.

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17 protocols using anti h3k4me2

1

Quantifying Protein Expression in Cochlea

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Total protein was isolated from a pool of 10 cultured cochleae in each group using the AllPrep DNA/RNA/Protein Mini Kit (QIAGEN, Hilden, Germany) according to the manufacturer’s instructions. A BCA protein kit (Beyotime, Jiangsu, China) was used to measure the protein concentrations. After separation by 12% SDS-PAGE, the proteins were blotted onto PVDF membranes (Immobilon-140 P; Millipore, Bedford, MA). The membranes were blocked with 5% nonfat dried milk in TBST (50 mM Tris-HCl pH 7.4, 150 mM NaCl, and 0.1% Tween-20) for 1 h at room temperature and hybridized overnight at 4 °C with the primary antibodies. Antibodies included anti-H3K4me2 (1:1000 dilution; Abcam), anti-cleaved caspase-3 (1:500 dilution; Cell Signaling Technology, Inc.), and anti-GAPDH (1:5000 dilution; Cell Signaling Technology, Inc.). The membranes were subsequently washed three times in Tris-buffered saline with Tween-20 (TBST) for 10 min each and then incubated with HRP-conjugated secondary antibody diluted 1:5000 (Supersignal West, Pierce, Rockford, IL) for 1 h at room temperature. Immunoreactive bands were visualized using the ECL-Kit according to the manufacturer’s instructions (Pierce).
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2

Comprehensive Chromatin Regulatory Network

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The antibodies used were: anti-SIX3, anti-H3K4me1, anti-H3K4me2, anti-JAG1, anti-GLI1, anti-ZEB2, anti-ANGPTL4 (Abcam, Hong Kong, China), anti-NCOA3 (BD Biosciences, USA), anti-MTA3, anti-MBD2/3, anti-H3pan-ac (Millipore, Billerica, MD, USA), anti-LSD1, anti-HDAC1, anti-HDAC2, anti-RbAp46/48 (Sigma-Aldrich, St Louis, MO, USA), anti-MTA1, anti-MTA2, and anti-WNT1 (Santa Cruz Biotechnology, Inc., Dallas, TX, USA). Human recombinant Wnt1 was purchased from Sigma-Aldrich. Protein A/G Sepharose CL-4B beads were from Amersham Biosciences (Indianapolis, IN, USA) and shRNAs were from GenePharma Co., Ltd (Shanghai, China).
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3

Co-immunoprecipitation of KDM5A

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The co-IP assay was performed as previously described. Briefly, MDA-MB-231 cells were seeded at the density of 1 × 106 cells in a six-well plate. Cells were treated with the indicated concentrations of 1 for 24 h under 37 °C 5% CO2. Cells were lysed and collected the protein samples. The concentration of protein samples was calculated using the Pierce BCA protein assay kit. 30 μg of each protein sample were incubated overnight with 10 μL pre-incubated anti-KDM5A magnetic beads according to the manufacturer’s protocol. The complex was washed 5 times to elute non-specific and non-cross-linked antibodies. Then, the precipitated proteins were subjected to SDS-PAGE and analyzed by Western blotting with anti-H3, anti-H3K4me2, and anti-H3K4me3 (1:1000, Abcam).
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4

Epigenetic Regulation in Cell Lines

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Primary antibodies: TRF2 (Novus NB110–57130), p21 (CST #2947), LSD1 antibody (CST #2139). REST (Origene#TA330562), co-REST (Abcam#32631), anti-Rap1 (sc-28197), anti-H3K4Me (Abcam 106165), anti-H3K4Me2 (Abcam 32356). Secondary antibodies: anti-Rabbit-HRP (CST), anti-Mouse-HRP (SantaCruz), anti-Rabbit-AP (sigma), anti-mouse-AP (sigma), Alexa Fluor® 488, Alexa Fluor® 594 (Molecular Probes, Life Technologies).
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5

Soleus Muscle Fractionation and Immunoblotting

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In brief, acutely isolated soleus muscle was labeled with R-BTX in cold PBS for 5 min, and separated into SR and NSR according to the localization of R-BTX signal under a fluorescence microscope. Tendons at the muscle terminus were excluded. Samples were lysed in the lysis buffer (50 mM Tris–HCl, pH 7.8; 150 mM NaCl; 1% Triton X-100; 0.1% SDS; 1 mM EDTA; 5 mM NaF; 2 mM Na3VO4; 1 mM PMSF; and protease inhibitor cocktails) and resolved by SDS-PAGE for immunoblot. Primary antibodies: anti-Kdm1a (1:1000, CST, 2184), anti-H3K4me2 (1:1000, Abcam, ab8580), anti-Histone H3 (1:1000, Proteintech, 17,168–1-AP), anti-Neurofilament-L (1:1000, CST, 2837), anti-Myl4 (1:1000, Proteintech, 67,533–1-Ig), anti-α-tubulin (1:5000, Proteintech, 66,031–1-Ig), anti-GAPDH (1:5000, Proteintech, 60,004–1-Ig). Secondary antibodies: HRP-conjugated goat anti-mouse/rabbit IgG (1:5000, Thermo Fisher, 31,430 and 31,460). Immunoreactive bands were visualized by using SuperSignal West Femto maximum sensitivity substrate (34,095, Thermo Fisher). Autoradiographic films were scanned with a Canon MF3010 scanner.
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6

Protein Expression Analysis by Western Blotting

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Western blotting was performed as previously described [57 (link)]. Briefly, 60 μg protein was separated by SDS-PAGE and transferred to a polyvinylidene fluoride membrane. Membranes were blocked with 5% skim milk for 2 hours and incubated for 15 hours with the following rabbit monoclonal primary antibodies: anti-LSD1 (diluted 1:500; Sigma, St. Louis, MO, USA), anti-HPV16 E7 (diluted 1:100; Bioss, Shanghai, China), anti-Vimentin (diluted 1:500; Cell Signaling Technology, Beverley, MA, USA), anti-E-cadherin (diluted 1:500; Cell Signaling Technology), anti-GAPDH (Epitomics), anti-H3K4me1 (Abcam, Cambridge, UK), anti-H3K4me2 (Abcam) and anti-H3K9me2 (Abcam), followed by 1 hour of incubation with the appropriate secondary antibody.
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7

Histone Acetylation Quantification Protocol

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Amino acids were purchased from Novabiochem of EMD Millipore (Darmstadt, Germany) and Chem-Impex (Wood Dale, IL). Anti-histone H3 (Abcam Cat# ab1791, RRID:AB_302613), anti-H3K4me2 (Abcam Cat# ab32356, RRID:AB_732924) and anti-H3K9ac (Abcam Cat# ab32129, RRID:AB_732920) antibodies and BHC80 were purchased from Abcam (Cambridge, MA). Anti-H3K14ac (Millipore Cat# 07–353, RRID:AB_310545) and anti-H3K18ac (Millipore Cat# 07–354, RRID:AB_441945) antibodies were purchased from EMD Millipore (Burlington, MA). HRP-linked anti-rabbit antibody (Cell Signaling Technology Cat# 7074, RRID:AB_2099233) was purchased from Cell Signaling Technology (Danvers, MA). HEK293F cell line (RRID:CVCL_6642) was purchased from Thermo Fisher Scientific (Waltham, MA) and shown to be negative for mycoplasma. His-FLAG-HDAC1 and Fluorogenic HDAC1 assay kit was purchased from BPS Bioscience (San Diego, CA).
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8

ChIP-seq Protocol for Histone Modifications

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Chromatin immunoprecipitations were performed using 1×107 cells per immunoprecipitation. Cells were fixed with 1% formaldehyde, and chromatin was sheared using a QSonica Q800R1 at 70% amplitude with a setting of 15 s ON and 45 s OFF, for a total of 160 min. A total of 5 μg of each antibody used was bound to Dynabeads (ThermoFisher Scientific, Waltham, MA, USA) in an overnight incubation at 4°C. Dynabeads were then incubated with sheared chromatin overnight at 4°C. Antibody-bound chromatin was washed, de-crosslinked at 65°C for 8 hr, and then eluted from beads. DNA was phenol-chloroform extracted and resuspended in 105 μL of water. A 15 μL qRT-PCR reaction was performed that contained 4 μL of chromatin, 2X FastStart Universal SYBR Green Master-Rox (Roche, Basel, Switzerland), and 2 μM solutions of primer pairs. Antibodies used included anti-H3K4me3, anti-H3K4me2, and anti-H3K4me1 (Abcam, Cambridge, MA, USA). Primer sequences are included in the Key Resources Table.
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9

ChIP-seq Protocol with Modifications

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ChIP was performed as described before [29 (link)]. Briefly, the MAGnify Chromatin Immunoprecipitation System (Life Technologies, 49–2024) was used with some modifications. Sonication was performed using the Biorupter UCD300 (Diagenode) to obtain chromatin fragments of approximately 100–300 bp. The following antibodies were used for ChIP: anti-H3K4me2 (Abcam ab7766), anti-H3K4me3 (Abcam ab8580), and anti-MyoD (Santa Cruz, sc-760). Sequencing libraries were prepared using the NEXTflex ChIP-Seq Kit (Bio Scientific, 5143) according to an in-house modified protocol. The libraries were 51 bp single-end sequenced on an Illumina HiSeq 2000 platform. Base calling was performed with the Illumina Casava pipeline version 1.8.0. Initial sequencing quality assessment was based on data passing the Illumina Chastity filter. The raw and processed ChIP-seq data was submitted to GEO (GSE63716).
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10

Chromatin Immunoprecipitation (ChIP) Assay

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ChIP was performed using ChIP Kit-One Step (Abcam) according to the manufacturer's protocol. 2 μL of antibodies was used in the ChIP process. Anti-MEF2D antibodies were the same in the IP assay. Anti-H3K4me1, anti-H3K4me2, anti-H3K4me3, anti-H3K9me1, anti-H3K9me2, and anti-H3K9me3 antibodies were obtained from Abcam. 2 μL from 100 μL input DNA and eluted DNA was detected by qPCR as described previously. The primers are shown in Table S1.
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