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11 protocols using hplc grade acetonitrile acn

1

Comprehensive Carbohydrate Analysis Protocol

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All foods and food products were purchased from local markets (Davis and Sacramento, CA, USA) including Safeway, Trader Joe’s, Davis Food Co-op, Whole Foods, Nugget Markets, Target, and online (Amazon). Trifluoroacetic acid (TFA, HPLC grade), 3-methyl-1-phenyl-2-pyrazoline-5-one (PMP), chloroform (HPLC grade), ammonium hydroxide solution (NH4OH) (28–30%), ammonium acetate, sodium acetate, glacial acetic acid, methanol (HPLC grade), D-fructose, D-mannose, D-allose, D-glucose, D-galactose, L-rhamnose, L-fucose, D-ribose, D-xylose, L-arabinose, N-acetyl-D-glucosamine (GlcNAc), N-acetyl-D-galactosamine (GalNAc), D-glucuronic acid (GlcA), and D-galacturonic acid (GalA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Arabinoxylan and polygalacturonic acid were purchased from Megazyme (Bray, Ireland). 96-well Nunc plates and lids were purchased from Thermo Scientific. Viscozyme was provided by Novozyme (Davis, CA, USA). Acetonitrile (ACN) (HPLC grade) was purchased from Honeywell (Muskegon, MI, USA). Nanopure water was used for all experiments.
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2

Carbohydrate Standards Preparation Protocol

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Ammonium acetate (NH4Ac), TFA, iodomethane (contains copper stabilizer, 99.5 %), sodium hydroxide pellets (NaOH) (semi-conductor grade, 99.99% trace metals basis), ammonium hydroxide solution (NH4OH) (28-30%, NH3 basis), PMP, dichloromethane (DCM), methanol (MeOH) (HPLC grade), stachyose, and anhydrous dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (St. Louis, MO). Acetonitrile (ACN) (HPLC grade) was purchased from Honeywell (Muskegon, MI). 2-O-(a-D-mannopyranosyl)-D-mannopyranose, 1,4-D-xylobiose, 1,5-a-L-arabinotriose, 1,3-a-1,6-a-D-mannotriose, isomaltotriose, 4-O-(b-D-galactopyranosyl)-D-galactopyranose, lactose, 2’-fucosyllactose (synthetic), nigerose, 3-O-(b-D-galactopyranosyl)-D-galactopyranose, 3-O-(a-D-mannopyranosyl)-D-mannopyranose, 1,4-b-D-mannotriose, maltohexaose, 1,6-a-D-mannotriose, and amylopectin were obtained from Carbosynth (Compton, UK). Galactan (Lupin), 33-α-L-arabinofuranosyl-xylotetraose and sophorose were acquired from Megazyme (Chicago, IL). Whole carrots were purchased from Whole Foods (Davis, CA). Nanopure water was used for all experiments.
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3

Extraction and Analysis of Plant-Derived Glycans

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Sodium borohydride (NaBH4), sodium hydroxide (NaOH), sodium acetate, glacial acetic acid, trifluoroacetic acid (TFA), hydrogen peroxide (H2O2), and iron(III) sulfate pentahydrate (Fe2(SO4)3·5H2O) were purchased from Sigma-Aldrich (St. Louis, MO). Galactan, amylose, β-glucan, arabinan, xyloglucan, curdlan, arabinoxylan, lichenan, glucomannan, mannan, galactomannan, arabinoGalactan and xylan were purchased from Megazyme (Bray, Ireland). Microcrystalline cellulose was purchased from ACROS Organics. Yellow corn meal (Zea mays), wheat grass (Triticum sp.), whole grain oat cereal (Avena sativa), horseradish root (Armoracia rusticana), and coffee grounds (Coffea arabica) were purchased from the Davis Co-op (Davis, CA). Coconut (Cocos nucifera), jackfruit (Artocarpus heterophyllus), guava (Psidium guajava), yam leaves (Dioscorea sp.), bok choy leaves (Brassica rapa) were purchased from 99 Ranch Market (Sacramento, CA). Acetonitrile (ACN, HPLC grade) was purchased from Honeywell (Muskegon, MI). Formic Acid (FA) was purchased from Fisher Scientific (Belgium, UK). Porous graphitized carbon (PGC) solid phase extraction (SPE) plates were purchased from Glygen (Columbia, MD). Nanopure water (18.2 MΩ-cm) was used for all experiments.
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4

Quantification of Zearalenone and Metabolites

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Reference standards of Zen (≥ 99%), Zer (≥ 98%, HPLC grade), zearalanone (Zan; ≥ 98%), β-zearalanol (bZal; ≥ 96%, HPLC grade), α-zearalenol (aZol; ≥ 98%), and β-zearalenol (bZol; ≥ 97%) were obtained from Sigma-Aldrich. The internal standards Rac-Zearalenone-d6 (Zen-d6; ≥ 96.9%) and α-zearalenol-d7 (aZol-d7; ≥ 98%) were obtained from Toronto Research Chemicals. Sodium acetate buffer solution (pH = 4.65, 0.2 M) was purchased from Honeywell Fluka. The enzyme β-glucuronidase from Helix pomatia (type HP-2, > 100,000 units/mL, sulfatase activity < 7500 units/mL) was obtained from Sigma-Aldrich. HPLC-grade methyl tert-butyl ether (MTBE) and methanol (MeOH) were purchased from VWR. HPLC-grade acetonitrile (ACN) was purchased from Honeywell. Water was obtained from a Milli-Q water purification system (Millipore).
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5

Analytical Characterization of Quaternary Ammonium Compounds

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Water was obtained from a Milli-Q water purification system (Millipore). HPLC-grade acetonitrile (ACN) was purchased from Honeywell. HPLC-grade ammonium acetate, acetone, and ethyl acetate were purchased from Thermo Fisher Scientific. Isopropanol and HPLC-grade formic acid were purchased from VWR. Standard mixtures of C12–C14 alkyl (ethyl benzyl) dimethyl ammonium chloride (61% AEB-12, 25% AEB-14; ≥98.0%) and benzalkonium chloride 10% solution (1.79% BAC-10, 67.83% BAC-12, 24.6% BAC-14, 4.54% BAC-16, 1.24% BAC-18) were purchased from Sigma Aldrich. An individual BAC-10 standard was purchased from Toronto Research Chemicals. An additional proprietary compound (X), best described as a hydroxylated QAC containing a long-chained hydrocarbon and an inorganic component, was obtained from the manufacturer and included in testing.
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6

Fluxapyroxad Analytical Standard Quantification

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The analytical standard fluxapyroxad (99.5% purity) was purchased from Supelco (Supelco Inc., Bellefonte, PA., USA)). HPLC-grade acetonitrile (ACN) was purchased from Honeywell (Charlotte, NC, USA), and petroleum ether (fraction boiling at 40–60 °C) of GC purity was supplied by Chempur (Piekary Śląskie, Poland). Sorbents: analytical grade MgSO4 and NaCitrate (Chempur, Piekary Śląskie, Poland), NaCl (Honeywell, Charlotte, NC, USA), disodium citrate sesquihydrate (Sigma Aldrich, Saint Louis, MO, USA), and primary-secondary amine (PSA) (Supelco Inc., Bellefonte, PA, USA) were used for QuEChERS extraction and purification.
Standard stock solutions of fluxapyroxad (1000 mg/L) were prepared in pure acetone, and were stored in the dark below − 20 °C. Standard working solutions of fluxapyroxad, at concentrations of 0.005, 0.01, 0.05, 0.1, 0.5, and 1 mg/L, were prepared from the stock solution by serial dilution. Correspondingly, matrix-matched standard solutions were obtained, at concentrations of 0.005, 0.01, 0.05, 0.1, 0.5, and 1 mg/L, by adding a blank sample matrix of apples to each serially diluted standard solution. All solutions were stored in a refrigerator in the dark at 4 °C. Apples for the preparation of a blank matrix were sampled from an organic orchard.
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7

Silymarin Product Comparison Study

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SBN (purity ≥95.0%), potassium phosphate monobasic/dibasic, and dimethyl sulfoxide (DMSO) were obtained from Sigma-Aldrich Co. (St. Louis, MO, USA). Diclofenac (purity ≥98.0%) was obtained from Tokyo Chemical Industry Co. (Tokyo, Japan). HPLC-grade acetonitrile (ACN) was obtained from Honeywell, Inc. (Muskegon, MA, USA). The silymarin products from four different manufacturers, indicated as ′Commercial product #1–4′, were evaluated. The names of the manufacturers were not disclosed for privacy reasons.
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8

Quantification of Zearalenone and Metabolites

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Reference standards of Zen (≥ 99%), Zer (≥ 98%, HPLC grade), zearalanone (Zan; ≥ 98%), β-zearalanol (bZal; ≥ 96%, HPLC grade), α-zearalenol (aZol; ≥ 98%), and β-zearalenol (bZol; ≥ 97%) were obtained from Sigma-Aldrich. The internal standards Rac-Zearalenone-d6 (Zen-d6; ≥ 96.9%) and α-zearalenol-d7 (aZol-d7; ≥ 98%) were obtained from Toronto Research Chemicals. Sodium acetate buffer solution (pH = 4.65, 0.2 M) was purchased from Honeywell Fluka. The enzyme β-glucuronidase from Helix pomatia (type HP-2, > 100,000 units/mL, sulfatase activity < 7500 units/mL) was obtained from Sigma-Aldrich. HPLC-grade methyl tert-butyl ether (MTBE) and methanol (MeOH) were purchased from VWR. HPLC-grade acetonitrile (ACN) was purchased from Honeywell. Water was obtained from a Milli-Q water purification system (Millipore).
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9

Synthesis and Purification of Crude LDX

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Crude LDX and its impurities were synthesized in our laboratory. l-Lysine hydrochloride (2), (S)-1-phenylethanamine (3) and methanesulfonic acid were purchased from Energy Chemical Corporation (Shanghai, China). The purity of all substances was >98%. HPLC-grade methanesulfonic acid were purchased from Fisher Scientific (Waltham, MA, USA). HPLC-grade acetonitrile (ACN) was purchased from Honeywell (Newark, NJ, USA). Deionized water for preparing the aqueous phase was obtained using a water purification system and all other chemicals were of analytical grade.
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10

Protein Extraction and Identification Protocol

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All the chemicals and reagents used were of analytical grade. Bovine serum albumin (BSA), formic acid (FA), dithiothreitol (DTT), and iodoacetamide (IAM) were purchased from Sigma-Aldrich (Burlington, MA, USA). Ammonium bicarbonate (AMBIC) was purchased from J.T. Baker (Phillipsburg, NJ, USA). Protein Assay dye was purchased from Bio-Rad (Hercules, CA, USA). The ExcelBand™ 3-color broad-range protein marker (5–245 kDa) was purchased from Smobio (Hsinchu, Taiwan). C18 RP-HPLC column (250 × 4.6 mm, 5 μm particle) was obtained from Thermo Scientific™ BioBasic™ (Waltham, MA, USA). HPLC grade acetonitrile (ACN) was purchased from Honeywell (Charlotte, NC, USA). Trifluoroacetic acid (TFA) was purchased from Acros Organics (Geel, Belgium). Sequence-grade modified trypsin was purchased from Promega (Madison, WI, USA).
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