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3 protocols using anti abca1

1

Lipid Profiling of Tumor-Associated Macrophages

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Single-cell suspensions from surgically resected CLM tissues from four patients were obtained as described in the previous paragraph. To assess expression of lipid transporters (ABCA1 and ABCG1), ApoE, and CD36, the following antibodies were included in the cocktail: anti-ABCA1 (Invitrogen; rabbit polyclonal), anti-ABCG1 (Novus Biologicals; rabbit polyclonal), anti-ApoE (BioLegend; clone E6D7), and anti-CD36 (BioLegend; clone 5–271). Detection of ABCG1 and ApoE was performed by intracellular staining with BD Cytofix/Cytoperm Solution (BD Biosciences). Cells were acquired on a FACSAria III (BD Biosciences) following the gating strategy shown in Fig. S2.
For lipid staining, cells were stained with the same cocktail used for cell sorting and then incubated with HCS LipidTOX Deep Red Neutral Lipid Stain (ThermoFisher; dilution 1:200) in PBS for 30 min at room temperature. Cells were immediately washed with PBS and acquired by flow cytometer. Lipid content of L-TAMs and S-TAMs was evaluated as mean fluorescence intensity (MFI) of the dye.
To test lipid uptake, cells were incubated with 0.8 µM of the fluorescent dye BODIPY 558/568 C12 (ThermoFisher) in PBS containing 0.1% BSA (fatty acid–free) for 1 min at 37°C. Cells were immediately washed with cold PBS containing 0.2% BSA and acquired by flow cytometer. Lipid uptake of L-TAMs and S-TAMs was evaluated as MFI of the dye.
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2

Protein Extraction and Western Blot Analysis

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Tissue was homogenized in Triton Lysis Buffer (12.5 mM HEPES pH 7.4, 50 mM NaCl, 500 μM EDTA, 5% glycerol, 0.5% Triton X-100, 50 mM sodium vanadate, 50 mM phenylmethyl sulfonyl fluoride, 5 mM aprotinin, 5 mM, Leupeptin) using a TissueLyser II Homogenizer (Qiagen) before undergoing centrifugation at 10,000g for 10 min at 4 °C. The supernatant was transferred to a new tube and protein quantified with Pierce BCA Protein Assay Kit (Thermo Fisher Scientific) and analysed by western blot by incubating with anti-RBFOX2 (Bethyl Laboratories), anti-PLA2G6 (Santa Cruz), anti-SREBP1 (Pharmigen), anti-vinculin (Sigma), anti-APOB (Proteintech), anti-ABCA1 (Invitrogen), anti-ACC, anti-pS79 ACC, anti-FASN (Cell Signaling) and anti-Tubulin (Santa Cruz) primary antibodies diluted 1:1,000 in blocking buffer (LI-COR) and secondary 680/800 nm antibodies (LI-COR) diluted 1:5,000. Membranes were imaged with an Odyssey infra-red scanner (LI-COR).
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3

Aspirin and ApoA-I Modulate ABCA1 Expression

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Cells were treated with 0.5 mM of aspirin or 5 μg/ml of apoA-I for 12 h and then harvested with RIPA buffer (50 mM Tris, 150 mM NaCl, 5 mM EDTA, 1% Triton-x100, 1% SDS, 0.5% Deoxycholate) containing the protease inhibitor cocktail (Sigma) after washing three times with DPBS. Samples were homogenized by a sonicator (Hielscher, UP50F) and passed through a 25-gauge needle. The suspension was clarified by centrifugation at 5,000 rpm for 10 min. The protein concentration of samples was determined by the Lowry method and was separated by SDS-PAGE and then transferred to a PVDF membrane (Roche). The membranes were incubated with anti-ABCA1 (1: 2,000; Invitrogen) and anti β-actin (1: 10,000, Sigma) overnight. Blots were washed with TBST and incubated with a horseradish peroxidase-conjugated secondary anti-mouse antibody. The membranes were developed with the ECL chemiluminescence system. The WB data was analyzed using ImageJ software and normalized with β–actin or GAPDH. All experiments were run in triplicate.
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