Single-cell suspensions from surgically resected CLM tissues from four patients were obtained as described in the previous paragraph. To assess expression of lipid transporters (ABCA1 and ABCG1), ApoE, and CD36, the following antibodies were included in the cocktail:
anti-ABCA1 (Invitrogen; rabbit polyclonal),
anti-ABCG1 (Novus Biologicals; rabbit polyclonal), anti-ApoE (BioLegend; clone E6D7), and
anti-CD36 (BioLegend; clone 5–271). Detection of ABCG1 and ApoE was performed by intracellular staining with
BD Cytofix/Cytoperm Solution (BD Biosciences). Cells were acquired on a
FACSAria III (BD Biosciences) following the gating strategy shown in
Fig. S2.
For lipid staining, cells were stained with the same cocktail used for cell sorting and then incubated with
HCS LipidTOX Deep Red Neutral Lipid Stain (ThermoFisher; dilution 1:200) in PBS for 30 min at room temperature. Cells were immediately washed with PBS and acquired by flow cytometer. Lipid content of L-TAMs and S-TAMs was evaluated as mean fluorescence intensity (MFI) of the dye.
To test lipid uptake, cells were incubated with 0.8 µM of the fluorescent dye
BODIPY 558/568 C12 (ThermoFisher) in PBS containing 0.1% BSA (fatty acid–free) for 1 min at 37°C. Cells were immediately washed with cold PBS containing 0.2% BSA and acquired by flow cytometer. Lipid uptake of L-TAMs and S-TAMs was evaluated as MFI of the dye.
Donadon M., Torzilli G., Cortese N., Soldani C., Di Tommaso L., Franceschini B., Carriero R., Barbagallo M., Rigamonti A., Anselmo A., Colombo F.S., Maggi G., Lleo A., Cibella J., Peano C., Kunderfranco P., Roncalli M., Mantovani A, & Marchesi F. (2020). Macrophage morphology correlates with single-cell diversity and prognosis in colorectal liver metastasis. The Journal of Experimental Medicine, 217(11), e20191847.