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6 protocols using fv1200

1

Immunofluorescence Staining and Imaging

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Cells were fixed in 4% PFA and incubated for 30 min in blocking buffer (PBS and 0.3% Triton X-100 and 5% horse serum). Primary antibodies (table S7) were diluted in antibody solution (PBS and 0.1% Triton X-100 and 1% horse serum) and applied overnight at RT. After three washes in PBS, secondary antibodies conjugated to Alexa fluorophores (Molecular Probes, Eugene, OR, USA) were diluted at 1:1000 in antibody solution and applied for 1 hour at RT. Cells were washed in PBS followed by nuclear staining by DAPI (Sigma-Aldrich) for 10 min. Cells were washed three more times and mounted by VECTASHIELD Mounting Medium-Vector Laboratories. Confocal image acquisition was performed using Olympus FV1200 and SP8 Leica DLS.
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2

Microscopic Imaging of Cellular Structures

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The sections were analyzed with the microscopes: Olympus BX51, Olympus FV 1200 and Leica sp-2 AOBS confocal. The figure preparation was done with Adobe Photoshop CS6 (Adobe Systems, San Jose, CA) and Canvas X (ACD Systems, Canada).
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3

Fluorescence Microscopy Image Analysis

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The analysis of the sections was made with a fluorescence microscope (Olympus BX51) equipped with appropriate filter combinations. Photomicrographs were obtained with a digital camera (Olympus DP72) adapted to the microscope. Additionally, sections were also analyzed with an Olympus FV 1200 or Leica sp-2 AOBS confocal microscope to assess the actual coexpression of two different markers in the same cell. Final adjustment of contrast and brightness of the photomicrographs was made with Adobe PhotoShop CS4 (Adobe Systems, San Jose, CA, USA). The compositions of the figures were mounted on plates using Canvas 11 (ACS Systems International, Santa Clara, CA, USA).
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4

Immunofluorescence Imaging of Neuronal APP

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At DIV 7, cultured primary neurons in 24 wells were washed once with 1X PBS, then fixed in 4% paraformaldehyde (PFA) in PBS at room temperature (RT) for 10 min. After three times washing with 1X PBS, cells were blocked with 10% normal donkey or goat serum in 1 X PBS for 30 min at RT followed by three times washing in 1 X PBS. Thereafter, cells were incubated with primary antibodies diluted in 1 X PBS containing 1% normal donkey or goat serum for 2–3 hr at RT. three times washing with 1 X PBS, incubated with appropriate secondary antibodies conjugated with Alexa Fluor 488, Alexa Fluor 555, or Alexa Fluor 647 (1:500, Invitrogen) in 1 X PBS containing 1% normal donkey or goat serum for 1 hr at RT. Washed with 1 X PBS for three times, then counterstained the slides with DAPI (1:2000, Sigma) and mounted by using Vectashield (Vector) after rinsing. Primary antibodies used in this study were rabbit anti-APP (1:100, Synaptic Systems, 127 003), mouse anti-rab5 (1:100, Synaptic Systems, 108011), mouse anti-rab11a (1:20, Santa Cruz, sc-166523), mouse anti- Golgin-97 (1:100, Invitrogen, A-21270), rat anti-Lamp1 (1:20, Santa Cruz, sc-19992). After staining, images were obtained by using confocal microscope (Olympus FV-1200 or Leica SP8). The percentage of APP or APP-ΔCRD co-localizing with rab5, rab11, Golgin-97 and Lamp1 was calculated using JACOP (Bolte and Cordelières, 2006 (link)).
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5

Quantifying Cerebellar Cell Lineages

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Sections were imaged using confocal microscopes (Zeiss-LSM800, Olympus FV-1200 or Leica SP8X)) and processed using Zeiss Zen Blue, FV-OSR or LAS X Core softwares. Confocal images were analyzed in Photoshop software (Adobe) and ImageJ by manually counting MADM-labeled cells. Cerebellar areas were identified by using the Allen Brain Atlas (http://mouse.brain-map.org/static/ atlas).
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6

Live Imaging of Zebrafish Embryos

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For live imaging, zebrafish embryos were anesthetized in 0.01% tricaine and embedded in 1.3% low-melting-point agarose. Imaging was performed using the Olympus FV1200, the Leica SP8 and the Andor Spinning disk with 40x/NA1.15 and 20x/NA0.7 objectives. For full brain imaging an average of 30-40 stacks were captured, with a z-step of 1.5 mm. Live imaging at high temporal resolution to track phagosomes was performed using the Zeiss Lightsheet Z.1 with a 20x detection objective, the Leica SP8 DLS and the Luxendo MuVi SPIM with a 25x detection objective, at a temporal resolution between 15 and 30 seconds. All images and videos were analyzed in Fiji and Imaris.
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